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(-) Description

Title :  CDIA-CT/CDII TOXIN AND IMMUNITY COMPLEX FROM YERSINIA PSEUDOTUBERCULOSIS
 
Authors :  R. P. Morse, P. M. Johnson, A. Credali, C. W. Goulding
Date :  11 May 15  (Deposition) - 28 Oct 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Toxin, Immunity, Complex, Endonuclease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. P. Morse, J. L. Willett, P. M. Johnson, J. Zheng, A. Credali, A. Iniguez, J. S. Nowick, C. S. Hayes, C. W. Goulding
Diversification Of Beta-Augmentation Interactions Between Cdi Toxin/Immunity Proteins.
J. Mol. Biol. V. 427 3766 2015
PubMed-ID: 26449640  |  Reference-DOI: 10.1016/J.JMB.2015.09.020

(-) Compounds

Molecule 1 - CDIA-CT TOXIN, CONSERVED DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: YPK_0575
    Organism Taxid: 502800
    Strain: YPIII
 
Molecule 2 - CDII TOXIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SEERU717_10215
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR RUBISLAW STR. ATCC 10717
    Organism Taxid: 938143

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:255binding site for residue CL A 301
2AC2SOFTWAREARG A:279binding site for residue CL A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZQU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr B:145 -Gly B:146
2Lys B:148 -Gly B:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZQU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZQU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZQU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...............ee.....eeeeeee.hhhhhhhh...hhhhhhhhhhhhhhhh..eeee..eeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zqu A 174 MPWEDYVGKTLPVGSRLPPNFKTYDYFDRATGAVVSAKSLDTQTMAKLSNPNQVYSSIKKNIDVTAKFEKASLSGVTVNSSMITSKEVRLAVPVNTTKAQWTEINRAIEYGKNQGVKVTVTQVK 297
                                   183       193       203       213       223       233       243       253       263       273       283       293    


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeee....eeeeeeee...eee.....eeee....hhhhhhhhhhhhhhh...ee.............eehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.eeeeeee....eeeee.eeee..eee.........eee....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zqu B   3 DIVKSAWASVKMNTDFICVDTYSGYRSNQLDPLGVQHLSSPDVSDLDLGEMVKDALSHSRFVLPAPRTDIWIHPEVTFDLDLYDSRRTVERYDEWVKKLMVHYGYKTKRALFKDMKSCDICCNHDAITISPTRHEKLEVWGGTGLKGSDNVILSVDSSPTEIGAGLRLALSRCK 176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZQU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZQU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZQU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZQU)

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  Cis Peptide Bonds
    Lys B:148 - Gly B:149   [ RasMol ]  
    Thr B:145 - Gly B:146   [ RasMol ]  
 

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 Related Entries

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