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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HISTIDINE KINASE YYCG WITH ADP
 
Authors :  Y. Cai
Date :  30 Apr 15  (Deposition) - 04 May 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Histidine Kinase, Adp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Cai
Activation Of A Sensor Histidine Kinase Is Poised By Atp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HISTIDINE KINASE
    Chains: A, B
    EC Number: 2.7.13.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 370-624
    Gene: HPK1, JDM1_0052
    Organism Scientific: LACTOBACILLUS PLANTARUM JDM1
    Organism Taxid: 644042
    Strain: JDM1
    Synonym: YYCG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:391 , ASN B:514 , LYS B:517 , TYR B:518 , ASP B:542 , GLY B:546 , ILE B:547 , PHE B:560 , ARG B:561 , VAL B:562 , GLY B:571 , GLY B:572 , THR B:573 , GLY B:574 , LEU B:575 , GLY B:576 , LEU B:577 , SER B:601 , PHE B:603binding site for residue ADP B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZKI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys B:476 -Asp B:477

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZKI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZKI)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZKI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhh......eeeeeee.....eeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeee..........hhhhh............hhhhhhhhhhhhh..eeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zki A 372 VTEQQKIDNDRKQFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDNPAKYYTIKREFTKRDLWVEIDTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFRVDKQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYE 610
                                   381       391       401       411       421       431       441       451       461       471     ||482       492       502       512       522       532       542       552       562 ||    577       587       597       607   
                                                                                                                                   477|                                                                                  564|                                        
                                                                                                                                    479                                                                                   570                                        


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhh....eeeeeee.....eeeehhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeee..........hhhhh............hhhhhhhhhhhhh..eeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zki B 384 QFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSRVDMELVNINEMFNYVLDRFDMILKKDKYYTIKREFTKRDLWVEIDTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFRVDKQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYE 610
                                   393       403       413       423       433       452       462       472    || 486       496       506       516       526       536       546       556       571       581       591       601         
                                                                                   441|                       477|                                                                               564|                                        
                                                                                    451                        482                                                                                570
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZKI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZKI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZKI)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZKI)

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  4zki
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  A0A0M3KKX3_L | A0A0M3KKX3
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  2.7.13.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0M3KKX3_L | A0A0M3KKX3: 4u7n 4u7o

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZKI)