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(-) Description

Title :  1.85 ANGSTROM CRYSTAL STRUCTURE OF LMO0812 FROM LISTERIA MONOCYTOGENES EGD-E
 
Authors :  S. N. Krishna, S. H. Light, E. V. Filippova, G. Minasov, O. Kiryukhina, R. Jedrzejczak, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  24 Feb 15  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Putative Pyrophosphohydrolase, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. N. Krishna, S. H. Light, E. V. Filippova, G. Minasov, O. Kiryukhina, R. Jedrzejczak, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
1. 85 Angstrom Crystal Structure Of Lmo0812 From Listeria Monocytogenes Egd-E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LMO0812 PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LMO0812
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3NA2Ligand/IonSODIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:55 , THR A:58 , MSE A:60binding site for residue NA A 201
2AC2SOFTWARETRP B:88 , LYS B:92 , LYS B:114 , PHE B:136 , LYS B:137 , GLN B:143 , TYR B:146 , HOH B:397 , HOH B:423binding site for residue FLC B 201
3AC3SOFTWAREVAL B:55 , THR B:58 , MSE B:60 , HOH B:426 , HOH B:427binding site for residue NA B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YF1)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:23 -Pro A:24
2Glu B:23 -Pro B:24

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YF1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YF1)

(-) Exons   (0, 0)

(no "Exon" information available for 4YF1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yf1 A  21 TGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEmTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSKSVWSYFKRGYDLQKWYNQGIKNNmEYGLNPSEIPPFFDEYARLVKWIFK 179
                                    30        40        50        60        70        80        90       100       110       120      |132       142       152 |     162       172       
                                                                  60-MSE                                                            127|                     154-MSE                     
                                                                                                                                     130                                                 


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yf1 B  19 KITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEmTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSVWSYFKRGYDLQKWYNQGIKNNmEYGLNPSEIPPFFDEYARLVKWIFKK 180
                                    28        38        48        58 |      68        78        88        98       108       118      |133       143       153|      163       173       
                                                                    60-MSE                                                          125|                    154-MSE                      
                                                                                                                                     131                                                 


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yf1 C  27 SHPLNVARILRRAGFREEVVVAGLLHDAVEDTEmTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSFKRGYDLQKWYNQGIKNNmEYGLNPSEIPPFFDEYARLVKWIFKK 180
                                    36        46        56   |    66        76        86        96       106       116       126||     144       154       164       174      
                                                            60-MSE                                                            127|               154-MSE                      
                                                                                                                               136                                            


Chain D from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yf1 D  27 SHPLNVARILRRAGFREEVVVAGLLHDAVEDTEmTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNmEYGLNPSEIPPFFDEYARLVKWIFKK 180
                                    36        46        56   |    66        76        86        96       106       116       126       136       146       156       166       176    
                                                            60-MSE                                                                                       154-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YF1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YF1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YF1)

(-) Gene Ontology  (6, 6)

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