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(-) Description

Title :  BETA-KETOACYL-ACP SYNTHASE III -2 (FABH2) (C113A) FROM VIBRIO CHOLERAE SOAKED WITH OCTANOYL-COA: CONFORMATIONAL CHANGES WITHOUT CLEARLY BOUND SUBSTRATE
 
Authors :  J. Hou, D. R. Cooper, I. G. Shabalin, M. Grabowski, I. Shumilin, W. F. And W. Minor, Center For Structural Genomics Of Infectious Diseas (Csgid)
Date :  11 Dec 14  (Deposition) - 11 Mar 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Fabh, Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hou, H. Zheng, D. R. Cooper, M. Chruszcz, M. D. Chordia, M. Grabowski W. Minor, Center For Structural Genomics Of Infectious Diseases (Csgid)
Structural And Enzymatic Studies Of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase Iii (Fabh) From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 PROTEIN 2
    Chains: A, B
    EC Number: 2.3.1.180
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FABH2, VC_A0751
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 / EL TOR INABA N16961)
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961
    Synonym: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III PROTEIN 2, BETA-KETOACYL-ACP SYNTHASE III 2,KAS III 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4X9O)

(-) Sites  (0, 0)

(no "Site" information available for 4X9O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X9O)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:88 -Pro A:89
2Gly A:314 -Leu A:315
3Ile B:88 -Pro B:89
4Gly B:314 -Leu B:315

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X9O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X9O)

(-) Exons   (0, 0)

(no "Exon" information available for 4X9O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee....eee........eee....hhhhhhhhhhhhhhhhhh.hhhhh.eeeee..........hhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeeeeee.hhhh......eeeeeeeeeee....eeeeeeeee.hhhhh.ee........eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee....................hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x9o A   3 QCYAEITGWGKCLPPATLSNHDLTGIEQRRISHVNTSDLATVAAQHAIACAGVSVEEIDLIIVATCSPDSLIPNIASRVQQNLGIPSAAAFDLNAAATGFLYGLETATRLMQASHYRHALVIGAERLSFYLDAVLFGDGAGAVVLSKTEQKVGLQDAQIGCDAQGRDILAVPKFGTAFDFVGKEIFKRAVRGMGAAAQQVLARSGLSTEEIDVVIPHQANIRIIQTLCDLAGIAQDKAFVNIHRYGNTSAATVPIALCEALEQGKIKPHDDLLVAAFGAGLTWGAGHIRWGERITPLGKSDAQLPSCDHTALDLLS 350
                                    12        22  ||    46        56        66        76        86        96       106       116       126       136       146 ||    162       172       182       192      |214       224       234       244       254       264       274       284       294       304       314       324       334       344      
                                                 25|                                                                                                         148|                                         199|                                                                                                                                          
                                                  40                                                                                                          155                                          212                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee....eeehhhhhhhh.....eee....hhhhhhhhhhhhhhhhhh.hhhhh.eeeee..........hhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeeeeee.hhhh...........eeeeeeeeeee....eeeeeeeee.hhhhh.ee........eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee....................hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x9o B   3 QCYAEITGWGKCLPPATLSNHDLSTFLDTGIEQRRISHVNTSDLATVAAQHAIACAGVSVEEIDLIIVATCSPDSLIPNIASRVQQNLGIPSAAAFDLNAAATGFLYGLETATRLMQASHYRHALVIGAERLSFYLDWTKDTAVLFGDGAGAVVLSKTEQKVGLQDAQIGCDAQGRDILAVPKFGTAFDFVGKEIFKRAVRGMGAAAQQVLARSGLSTEEIDVVIPHQANIRIIQTLCDLAGIAQDKAFVNIHRYGNTSAATVPIALCEALEQGKIKPHDDLLVAAFGAGLTWGAGHIRWGERITPLGKSDAQLPSCDHTALDLLS 350
                                    12        22       |41        51        61        71        81        91       101       111       121       131       141       151|      162       172       182       192      |214       224       234       244       254       264       274       284       294       304       314       324       334       344      
                                                      30|                                                                                                            151|                                           199|                                                                                                                                          
                                                       40                                                                                                             153                                            212
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X9O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X9O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X9O)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Gly A:314 - Leu A:315   [ RasMol ]  
    Gly B:314 - Leu B:315   [ RasMol ]  
    Ile A:88 - Pro A:89   [ RasMol ]  
    Ile B:88 - Pro B:89   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABH2_VIBCH | Q9KLJ3: 4wzu 4x0o 4x9k 5kp2 5v0p

(-) Related Entries Specified in the PDB File

4wzu
4x0o
4x9k RELATED ID: IDP01493 RELATED DB: TARGETTRACK