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(-) Description

Title :  STRUCTURE OF CHLORITE DISMUTASE-LIKE PROTEIN FROM LISTERIA MONOCYTOGENES
 
Authors :  A. Hagmueller, G. Mlynek, K. Djinovic-Carugo
Date :  12 Nov 14  (Deposition) - 04 Feb 15  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Ferredoxin-Like Fold, Chlorite Dismutase-Like Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hofbauer, A. Hagmuller, I. Schaffner, G. Mlynek, M. Krutzler, G. Stadlmayr, K. F. Pirker, C. Obinger, H. Daims, K. Djinovic-Carugo, P. G. Furtmuller
Structure And Heme-Binding Properties Of Hemq (Chlorite Dismutase-Like Protein) From Listeria Monocytogenes.
Arch. Biochem. Biophys. V. 574 36 2015
PubMed-ID: 25602700  |  Reference-DOI: 10.1016/J.ABB.2015.01.010

(-) Compounds

Molecule 1 - PUTATIVE HEME-DEPENDENT PEROXIDASE LMO2113
    Chains: A, B, C, D, E
    EC Number: 1.11.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: TUNER
    Expression System Taxid: 562
    Gene: LMO2113
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E
    Synonym: UPF0447 PROTEIN LMO2113

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1K5Ligand/IonPOTASSIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:63 , GLY A:65 , ALA A:68 , ASP A:69 , GLU B:86binding site for residue K A 301
2AC2SOFTWAREGLU A:86 , ILE C:63 , GLY C:65 , ALA C:68 , ASP C:69binding site for residue K A 302
3AC3SOFTWAREILE B:63 , GLY B:65 , ALA B:68 , ASP B:69 , HOH B:459 , GLU E:86 , HOH E:434binding site for residue K B 301
4AC4SOFTWAREGLU C:86 , ILE D:63 , GLY D:65 , ALA D:68 , ASP D:69 , HOH D:477binding site for residue K C 301
5AC5SOFTWAREGLU D:86 , HOH D:480 , ILE E:63 , GLY E:65 , ALA E:68 , ASP E:69 , HOH E:545binding site for residue K D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WWS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WWS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WWS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WWS)

(-) Exons   (0, 0)

(no "Exon" information available for 4WWS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee...........hhhhhhhhhhhhh.......eeeeeeeee.ee..ee.hhhhhhhhhhhhhhhhhhhhh.....eeeeee........eeeeeee..hhhhhhhhhhhhhhhhhhh.eee...eeeee.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wws A   5 VKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI 251
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       


Chain B from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee.hhhhhhhhhhhhh.......eeeeeeeee.ee..ee.hhhhhhhhhhhhhhhhhhhhhh....eeeeee........eeeeeee.hhhhhhhhhhhhhhhhhhhhheee...eeeee.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wws B   7 TLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI 251
                                    16        26        36        46        56        66        76        86        96       106    || 127       137       147       157       167       177       187       197       207       217       227       237       247    
                                                                                                                                  111|                                                                                                                                
                                                                                                                                   123                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeeeee.hhhhhhhhhhhhhh.hhhh.eeeeeeeeeeeee.hhhhh..hhhhhh.......eeeeeeeee.ee..ee.hhhhhhhhhhhhhhhhhhhhhh....eeeeee........eeeeeee..hhhhhhhhhhhhhhhhhhh.eee...eeeee.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wws C   6 KTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI 251
                                    15        25        35        45        55        65        75        85        95       105     ||126       136       146       156       166       176       186       196       206       216       226       236       246     
                                                                                                                                   111|                                                                                                                                
                                                                                                                                    123                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeeeee.hhhhhhhhhhhhhh.hhhh.eeeeeeeeeeeee..hhhhhhhhhhhhh.......eeeeeeeee.ee..ee.hhhhhhhhhhhhhhhhhhhhhh....eeeeee........eeeeeee..hhhhhhhhhhhhhhhhhhhheee...eeeee.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wws D   7 TLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI 251
                                    16        26        36        46        56        66        76        86        96       106    || 126       136       146       156       166       176       186       196       206       216       226       236       246     
                                                                                                                                  111|                                                                                                                                 
                                                                                                                                   122                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee...........hhhhhhhhhhhhh.......eeeeeeeee.ee..ee.hhhhhhhhhhhhhhhhhhhhhh....eeeeee........eeeeeee..hhhhhhhhhhhhhhhhhhhheee...eeeee.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wws E   5 VKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI 251
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WWS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WWS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WWS)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wws
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 Related Entries

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UniProtKB/Swiss-Prot
        Y2113_LISMO | Q8Y5F1: 5loq

(-) Related Entries Specified in the PDB File

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