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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOTRANSFERASE SYSTEM COMPONENT EIIA FROM STREPTOCOCCUS AGALACTIAE
 
Authors :  Y. Nakamichi, Y. Maruyama, S. Oiki, B. Mikami, K. Murata, W. Hashimoto
Date :  28 May 14  (Deposition) - 20 Aug 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C (1x),D (1x)
Biol. Unit 3:  E (1x),F (1x)
Keywords :  Phosphotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Nakamichi, Y. Maruyama, S. Oiki, B. Mikami, K. Murata, W. Hashimoto
Crystal Structure Of Phosphotransferase System Component Eiia From Streptococcus Agalactiae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN GBS1890
    Chains: A, B, C, D, E, F
    EC Number: 2.7.1.69
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GBS1890
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS AGALACTIAE SEROTYPE III (STRAIN NEM316)
    Organism Taxid: 211110
    Strain: NEM316

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   C (1x)D (1x)  
Biological Unit 3 (1x):     E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric Unit (1, 11)
No.NameCountTypeFull Name
1GOL11Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:11 , ASP A:14 , GLY A:15 , ASN B:11 , ASP B:14 , GLY B:15binding site for residue GOL A 201
02AC2SOFTWARESER A:94 , MET A:97 , GLU A:98 , SER A:119 , GLN C:49binding site for residue GOL A 202
03AC3SOFTWARELEU A:64 , SER B:94 , GLU B:98 , HOH B:312 , HOH B:313 , HOH B:330 , GLN F:49binding site for residue GOL B 201
04AC4SOFTWARESER B:40 , ASN B:42 , ASP B:43binding site for residue GOL B 202
05AC5SOFTWARESER C:94 , GLU C:98 , SER C:119 , HOH C:312 , GLN E:49binding site for residue GOL C 201
06AC6SOFTWAREGLN B:49 , SER D:94 , GLU D:98 , HOH D:306 , HOH D:310binding site for residue GOL D 201
07AC7SOFTWAREASN C:11 , ASP C:14 , GLY C:15 , ASN D:11 , ASP D:14 , GLY D:15binding site for residue GOL D 202
08AC8SOFTWARESER D:40 , ASN D:42 , ASP D:43binding site for residue GOL D 203
09AC9SOFTWARESER D:41 , THR D:68 , ASN D:71 , VAL D:72 , HOH D:332 , HOH D:336binding site for residue GOL D 204
10AD1SOFTWAREGLN A:49 , SER E:94 , GLU E:98 , SER E:119 , GLY E:123 , HOH E:301binding site for residue GOL E 201
11AD2SOFTWARESER E:41 , THR E:68 , ASN E:71 , VAL E:72binding site for residue GOL E 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TKZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TKZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TKZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TKZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4TKZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhh......eeeeee..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.ee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz A   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz B   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain C from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz C   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain D from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz D   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain E from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz E   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain F from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tkz F   1 MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVIDFKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTC 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TKZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TKZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TKZ)

(-) Gene Ontology  (2, 2)

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