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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PHOTOCONVERTED GREEN FLUORESCENT PROTEIN NOWGFP_CONV (THE VARIANT OF CYAN CERULEAN) AT PH 7.0
 
Authors :  V. Z. Pletnev, N. V. Pletneva, S. V. Pletnev
Date :  17 Dec 14  (Deposition) - 02 Sep 15  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Fluorescent Protein, Photoconverted Nowgfp, Twg Chromophore, Beta- Barrel, Variant Of Cyan Cerulean (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Z. Pletnev, N. V. Pletneva, K. S. Sarkisyan, A. S. Mishin, K. A. Lukyanov, E. A. Goryacheva, R. H. Ziganshin, Z. Dauter, S. Pletne
Structure Of The Green Fluorescent Protein Nowgfp With An Anionic Tryptophan-Based Chromophore.
Acta Crystallogr. , Sect. D V. 71 1699 2015
PubMed-ID: 26249350  |  Reference-DOI: 10.1107/S1399004715010159

(-) Compounds

Molecule 1 - NOWGFP_CONV
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1CRF3Mod. Amino Acid[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2GOL9Ligand/IonGLYCEROL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CRF1Mod. Amino Acid[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2GOL2Ligand/IonGLYCEROL
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1CRF1Mod. Amino Acid[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2GOL4Ligand/IonGLYCEROL
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1CRF1Mod. Amino Acid[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2GOL3Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:23 , ASP A:129 , ASP C:129BINDING SITE FOR RESIDUE GOL A 301
2AC2SOFTWAREGLU A:142 , TYR A:143 , GLU A:172 , HOH A:455BINDING SITE FOR RESIDUE GOL A 302
3AC3SOFTWAREGLU B:5 , ALA B:37 , ALA B:72 , ARG B:73 , TYR B:74 , LYS B:79 , LYS B:85 , HOH B:448BINDING SITE FOR RESIDUE GOL B 301
4AC4SOFTWARESER B:86 , ALA B:87 , GLU B:90 , GLY B:91 , PRO B:187 , ILE B:188 , GLY B:189 , GLY B:191 , PRO B:192 , VAL B:193BINDING SITE FOR RESIDUE GOL B 302
5AC5SOFTWAREASP A:36 , TYR A:39 , LYS A:41 , LYS B:113 , GLU B:115 , VAL B:120 , ARG B:122BINDING SITE FOR RESIDUE GOL B 303
6AC6SOFTWARELYS C:131 , ASP C:133BINDING SITE FOR RESIDUE GOL C 301
7AC7SOFTWAREGLU C:32 , LYS C:45 , HOH C:411BINDING SITE FOR RESIDUE GOL C 302
8AC8SOFTWAREASN C:159 , PRO C:187 , GLY C:189 , ASP C:190 , GLY C:191 , HOH C:416 , HOH C:420 , HOH C:424 , HOH C:440BINDING SITE FOR RESIDUE GOL C 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RYW)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Met A:88 -Pro A:89
2Met B:88 -Pro B:89
3Met C:88 -Pro C:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RYW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RYW)

(-) Exons   (0, 0)

(no "Exon" information available for 4RYW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh.eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhh.....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ryw A   2 SKGEKLFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKMSLKFICTTGKLPVPWPTLKTTLtMQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGVDFKEDGNILGHKLEYNAISGNANITADKQKNGIKAYFTIRHDVEDGSVLLADHYQQNTPIGDGPVLLPDNHYLSTQSKQSKDPNEKRDHMVLLEFVTAAGIPL 231
                                    11        21        31        41        51        61   ||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
                                                                                          65-CRF                                                                                                                                                                
                                                                                           68                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhh.....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ryw B   2 SKGEKLFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKMSLKFICTTGKLPVPWPTLKTTLtMQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGVDFKEDGNILGHKLEYNAISGNANITADKQKNGIKAYFTIRHDVEDGSVLLADHYQQNTPIGDGPVLLPDNHYLSTQSKQSKDPNEKRDHMVLLEFVTAAGIPL 231
                                    11        21        31        41        51        61   ||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
                                                                                          65-CRF                                                                                                                                                                
                                                                                           68                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhhh....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeeee...eeeeeeeeeeeee...........eeeeee..ee........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ryw C   2 SKGEKLFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKMSLKFICTTGKLPVPWPTLKTTLtMQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGVDFKEDGNILGHKLEYNAISGNANITADKQKNGIKAYFTIRHDVEDGSVLLADHYQQNTPIGDGPVLLPDNHYLSTQSKQSKDPNEKRDHMVLLEFVTAAGIPL 231
                                    11        21        31        41        51        61   ||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
                                                                                          65-CRF                                                                                                                                                                
                                                                                           68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RYW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RYW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RYW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4RYW)

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2wso CYAN FLUORESCENT PROTEIN, CERULEAN, AT PH ~7