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(-) Description

Title :  ANTI CD70 LLAMA GLAMA FAB 27B3
 
Authors :  A. Klarenbeek, K. El Mazouari, A. Desmyter, C. Blanchetot, A. Hultber R. C. Roovers, C. Cambillau, S. Spinelli, J. Del-Favero, T. Verrips, H Haard, I. Achour
Date :  03 Sep 14  (Deposition) - 24 Jun 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immunoglobulin Fold, Immune System, Human Cd70 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Klarenbeek, K. E. Mazouari, A. Desmyter, C. Blanchetot, A. Hultberg, N. De Jonge, R. C. Roovers, C. Cambillau, S. Spinelli, J. Del-Favero, T. Verrips, H. J. De Haard, I. Achour
Camelid Ig V Genes Reveal Significant Human Homology Not Seen In Therapeutic Target Genes, Providing For A Powerful Therapeutic Antibody Platform.
Mabs V. 7 693 2015
PubMed-ID: 26018625  |  Reference-DOI: 10.1080/19420862.2015.1046648

(-) Compounds

Molecule 1 - ANTI CD70 LLAMA GLAMA FAB 27B3 LIGHT CHAIN
    Chains: L
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell: OVARY
    Expression System Taxid: 10029
    Organism Scientific: LLAMA GLAMA
    Organism Taxid: 9844
 
Molecule 2 - ANTI CD70 LLAMA GLAMA FAB 27B3 HEAVY CHAIN
    Chains: H
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell: OVARY
    Expression System Taxid: 10029
    Organism Scientific: LLAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP H:47 , HOH H:650 , HOH H:704 , SER L:95 , ASN L:96 , PRO L:97 , SER L:98 , GLU L:100 , HOH L:640BINDING SITE FOR RESIDUE GOL L 301
2AC2SOFTWARETYR H:33 , ASN H:35 , ASP H:50 , ASP H:99BINDING SITE FOR RESIDUE CA H 301

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2H:149 -H:205
3L:22 -L:90
4L:138 -L:197

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn L:96 -Pro L:97
2Tyr L:144 -Pro L:145
3Phe H:155 -Pro H:156
4Glu H:157 -Pro H:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R90)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R90)

(-) Exons   (0, 0)

(no "Exon" information available for 4R90)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee.........eeee...eeeee........eeeeeeee.......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhh...eeeeeehhhheeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r90 H   1 EVQLVESGGGLVQPGGSLRLSCAASGFTFSVYYMNWVRQAPGKGLEWVSDINNEGGTTYYADSVKGRFTISRDNAKNTLTLQMNSLKPEDTALYYCVRDAGYSNHVPIFDSWGQGTQVIVASASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS 224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    


Chain L from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..eeee....eeeeeeee.....hhhhh.eeeee......eeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeee.......ee...eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..eee...eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r90 L   3 VVTQEPSLTVSPGGTVTLTCGLKSGSVTSTNFPTWYQQTPGQAPRLLIYNTNTRHSGVPSRFSGSISENKAALTITGAQPEDEAEYFCALFISNPSVEFGGGTQLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R90)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R90)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R90)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4R90)

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    Glu H:157 - Pro H:158   [ RasMol ]  
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    Tyr L:144 - Pro L:145   [ RasMol ]  
 

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  4r90
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 Related Entries

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