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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM VIBRIO CHOLERAE
 
Authors :  N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak, Csgid, Cent Structural Genomics Of Infectious Diseases (Csgid)
Date :  28 Aug 14  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha Beta Fold, Alpha Beta Alpha Sandwich, Deaminase, Cytosol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Maltseva, Y. Kim, K. Kwon, W. F. Anderson, A. Joachimiak, Csgid
Crystal Structure Of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSAMINE-6-PHOSPHATE DEAMINASE
    Chains: A, B, C
    EC Number: 3.5.99.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: NAGB, VC_A1025
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961
    Organism Taxid: 243277
    Strain: N16961
    Synonym: GLCN6P DEAMINASE, GNPDA, GLUCOSAMINE-6-PHOSPHATE ISOMERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FMT1Ligand/IonFORMIC ACID
3GOL1Ligand/IonGLYCEROL
4MG3Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:97 , HOH A:414 , HOH A:434 , HOH A:435 , ASP B:112BINDING SITE FOR RESIDUE MG A 301
2AC2SOFTWAREASN A:140BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWARETYR A:254 , HOH A:427 , ASP C:141 , PRO C:149BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWAREILE B:97 , HOH B:422 , HOH B:435 , HOH B:451 , HOH B:452 , ASP C:112BINDING SITE FOR RESIDUE MG B 300
5AC5SOFTWAREGLY B:43 , THR B:44BINDING SITE FOR RESIDUE FMT B 301
6AC6SOFTWAREASP A:112 , HOH A:420 , ILE C:97 , HOH C:434 , HOH C:463 , HOH C:464BINDING SITE FOR RESIDUE MG C 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R7T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R7T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R7T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R7T)

(-) Exons   (0, 0)

(no "Exon" information available for 4R7T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhh..........eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeee.hhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r7t A   1 MRLIPLKAAAQVGKWAAAHIVKRINEFQPTAERPFVLGLPTGGTPLATYKALIEMHKAGEVSFKHVVTFNMDEYVGLAADHPESYRSFMYNNFFNHIDIQEENINLLNGNTDDHEAECKRYEDKIKSYGKINLFMGGVGNDGHIAFNEPASSLSSRTRIKTLTEDTRIANSRFFDGDINQVPKYALTIGVGTLLDAQEIMILVTGHNKALALQAAVEGSVNHLWTVSALQLHPKAVIVCDEPSTQELKVKTVKYFTELEAKNIVGF 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhh.....eeee.....................eeee.hhhhhhhh............eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeee.hhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r7t B   1 MRLIPLKAAAQVGKWAAAHIVKRINEFQPTAERPFVLGLPTGGTPLATYKALIEMHKAGEVSFKHVVTFNMDEYVGLAADHPESYRSFMYNNFFNHIDIQEENINLLNGNTDDHEAECKRYEDKIKSYGKINLFMGGVGNDGHIAFNEPASSLSSRTRIKTLTEDTRIANSFFDGDINQVPKYALTIGVGTLLDAQEIMILVTGHNKALALQAAVEGSVNHLWTVSALQLHPKAVIVCDEPSTQELKVKTVKYFTELEAKNIVGF 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170||     181       191       201       211       221       231       241       251       261     
                                                                                                                                                                                                    171|                                                                                             
                                                                                                                                                                                                     173                                                                                             


Chain C from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeee.hhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r7t C   1 MRLIPLKAAAQVGKWAAAHIVKRINEFQPTAERPFVLGLPTGGTPLATYKALIEMHKAGEVSFKHVVTFNMDEYVGLAADHPESYRSFMYNNFFNHIDIQEENINLLNGNTDDHEAECKRYEDKIKSYGKINLFMGGVGNDGHIAFNEPASSLSSRTRIKTLTEDTRIANSRFFDINQVPKYALTIGVGTLLDAQEIMILVTGHNKALALQAAVEGSVNHLWTVSALQLHPKAVIVCDEPSTQELKVKTVKYFTELEAKNIVGF 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  182       192       202       212       222       232       242       252       262    
                                                                                                                                                                                                       174|                                                                                         
                                                                                                                                                                                                        177
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R7T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R7T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R7T)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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