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(-) Description

Title :  LAMBDA-[RU(TAP)2(DPPZ)]2+ BOUND TO D(TCGGCGCCIA) AT HIGH RESOLUTION
 
Authors :  S. P. Gurung, J. P. Hall, C. J. Cardin
Date :  01 Jun 14  (Deposition) - 03 Jun 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Intercalation, Ruthenium Complex, Inosine, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Keane, J. P. Hall, S. P. Gurung, F. E. Poynton, H. Beer, K. Buchner, D. J. Cardin, M. Towrie, J. A. Brazier, S. M. Quinn, J. M. Kelly, C. J. Cardin
Site-Selective Sensitised Guanine Photooxidation In A Dna Duplex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*IP*A)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1BA1Ligand/IonBARIUM ION
2CL1Ligand/IonCHLORIDE ION
3RKL1Ligand/IonRU(TAP)2(DPPZ) COMPLEX
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2CL-1Ligand/IonCHLORIDE ION
3RKL2Ligand/IonRU(TAP)2(DPPZ) COMPLEX

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:3 , DG A:4 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:204 , HOH A:211 , HOH A:279BINDING SITE FOR RESIDUE BA A 101
2AC2SOFTWAREDT A:1 , DC A:2 , DG A:3 , DG A:4 , DC A:5 , DC A:7 , DC A:8 , DI A:9 , DA A:10 , CL A:103 , HOH A:223 , HOH A:262BINDING SITE FOR RESIDUE RKL A 102
3AC3SOFTWAREDG A:4 , DC A:5 , RKL A:102 , HOH A:206BINDING SITE FOR RESIDUE CL A 103

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:10
                                         
                  4qio A  1 TCGGCGCCIA 10
                                    10
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(-) Related Entries Specified in the PDB File

3qrn LAMBDA-[RU(TAP)2(DPPZ)]2+ BOUND TO D(TCGGCGCCGA) AT HIGH RESOLUTION