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(-) Description

Title :  CRYSTAL STRUCTURE OF VCCNT-7C8C BOUND TO URIDINE
 
Authors :  Z. L. Johnson, S. -Y. Lee
Date :  17 Apr 14  (Deposition) - 13 Aug 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Membrane Protein, Sodium-Coupled Transporter, Drug Transporter, Uridine, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. L. Johnson, J. H. Lee, K. Lee, M. Lee, D. Y. Kwon, J. Hong, S. Y. Lee
Structural Basis Of Nucleoside And Nucleoside Drug Selectivity By Concentrative Nucleoside Transporters.
Elife V. 3 03604 2014
PubMed-ID: 25082345  |  Reference-DOI: 10.7554/ELIFE.03604

(-) Compounds

Molecule 1 - NUPC FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26
    Expression System Strain: C41 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC_2352
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1DMU1Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
2NA1Ligand/IonSODIUM ION
3URI1Ligand/IonURIDINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1DMU3Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
2NA-1Ligand/IonSODIUM ION
3URI3Ligand/IonURIDINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:154 , TYR A:192 , LEU A:259 , GLU A:332 , PHE A:333 , PHE A:366 , ASN A:368 , SER A:371 , ILE A:374 , HOH A:628 , HOH A:629 , HOH A:630binding site for residue URI A 501
2AC2SOFTWAREASN A:149 , VAL A:152 , SER A:183 , ILE A:184 , HOH A:627binding site for residue NA A 502
3AC3SOFTWAREALA A:243 , ASN A:244 , ILE A:246 , LEU A:369 , ALA A:391binding site for residue DMU A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PD6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PD6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PD6)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4PD6)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pd6 A   5 MSCCGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAPLVVRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDKPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKAVIAGTLSNLMAATIAGFFL 416
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224    || 245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415 
                                                                                                                                                                                                                                                          229|                                                                                                                                                                               
                                                                                                                                                                                                                                                           241
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PD6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PD6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PD6)

(-) Gene Ontology  (7, 7)

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 Related Entries

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        Q9KPL5_VIBCH | Q9KPL5: 3tij 4pb1 4pb2 4pd5 4pd7 4pd8 4pd9 4pda

(-) Related Entries Specified in the PDB File

3tij 3TIJ CONTAINS WILD-TYPE VCCNT BOUND TO URIDINE AT A LOWER RESOLUTION