4P3H - JenaLib

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Title :   CRYSTAL STRUCTURE OF KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS (KSHV) PROTEASE IN COMPLEX WITH DIMER DISRUPTOR

Authors :   J. E. Gable

Date :   07 Mar 14 (Deposition) - 23 Jul 14 (Release) - 01 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (2x),B (2x)

Keywords :   Protein-Protein Interaction Inhibition, Serine Protease, Inhibitor Complex, Beta Barrel And Alpha Helices, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Gable, G. M. Lee, P. Jaishankar, B. R. Hearn, C. A. Waddling, A. R. Renslo, C. S. Craik
Broad-Spectrum Allosteric Inhibition Of Herpesvirus Proteases.
Biochemistry V. 53 4648 2014
PubMed-ID: 24977643 | Reference-DOI: 10.1021/BI5003234

Molecule 1 - KSHV PROTEASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1-196
	Gene	:	ORF17
	Organism Common	:	HHV-8
	Organism Scientific	:	HUMAN HERPESVIRUS 8
	Organism Taxid	:	37296

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (2x)	:	A (2x)	B (2x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	25G	3	Ligand/Ion	N-[2-BENZYL-4-(1H-TETRAZOL-5-YL)PHENYL]-6-(CYCLOHEXYLMETHYL)PYRIDINE-2-CARBOXAMIDE
2	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	25G	1	Ligand/Ion	N-[2-BENZYL-4-(1H-TETRAZOL-5-YL)PHENYL]-6-(CYCLOHEXYLMETHYL)PYRIDINE-2-CARBOXAMIDE
2	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	-1	Ligand/Ion	GLYCEROL

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	25G	2	Ligand/Ion	N-[2-BENZYL-4-(1H-TETRAZOL-5-YL)PHENYL]-6-(CYCLOHEXYLMETHYL)PYRIDINE-2-CARBOXAMIDE
2	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	25G	2	Ligand/Ion	N-[2-BENZYL-4-(1H-TETRAZOL-5-YL)PHENYL]-6-(CYCLOHEXYLMETHYL)PYRIDINE-2-CARBOXAMIDE
2	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	-1	Ligand/Ion	GLYCEROL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:44 , PHE A:76 , LEU A:79 , PHE A:189 , PRO A:192 , HOH A:323 , LEU B:47 , PRO B:192 , LEU B:193 , THR B:195 , 25G B:204 , 25G B:205	binding site for residue 25G A 201
2	AC2	SOFTWARE	HIS A:88 , THR B:108 , TRP B:109 , ARG B:143 , HOH B:307 , HOH B:311 , HOH B:333	binding site for residue GOL B 201
3	AC3	SOFTWARE	HOH A:375 , TRP B:54 , LEU B:184 , SER B:185	binding site for residue DMS B 202
4	AC4	SOFTWARE	HIS B:88 , ARG B:91 , HOH B:304 , HOH B:321 , HOH B:347	binding site for residue DMS B 203
5	AC5	SOFTWARE	LYS A:18 , TRP A:109 , ALA A:139 , 25G A:201 , HOH A:319 , PHE B:76 , LEU B:79 , LEU B:83 , VAL B:89 , ALA B:90 , ILE B:105 , TRP B:109 , SER B:191 , LEU B:193 , 25G B:205 , HOH B:319 , HOH B:345	binding site for residue 25G B 204
6	AC6	SOFTWARE	ARG A:82 , LEU A:83 , SER A:87 , TRP A:109 , LEU A:193 , 25G A:201 , HOH A:317 , LEU B:47 , ALA B:139 , LEU B:140 , ARG B:144 , 25G B:204 , HOH B:306 , HOH B:318 , HOH B:320 , HOH B:329	binding site for residue 25G B 205

(no "SS Bond" information available for 4P3H)

Asymmetric Unit

No.	Residues
1	Leu A:34	-	Pro A:35
2	Leu B:34	-	Pro B:35

(no "SAP(SNP)/Variant" information available for 4P3H)

(no "PROSITE Motif" information available for 4P3H)

(no "Exon" information available for 4P3H)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.eeee.......eeehhhhhhhhh......eeee..hhhhh.eeeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.eeeeee..hhhhhh......eeeeeee..........eee.hhhhhhh.....hhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p3h A   4 GLYVGGFVDVVSCPKLEQELYLDPDQVTDYLPVTEPLPITIEHLPETEVGWTLGLFQVSHGIFCTGAITSPAFLELASRLADTSHVARAPVKNLPKEPLLEILHTWLPGLSLSSIHPRELSQTPSGPVFQHVSLCALGRRRGTVAVYGHDAEWVVSRFSSVSKSERAHILQHVSSCRLEDLSTPNFVSPL 193
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain B from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.eeee.......eeehhhhhhhhh......eee........eeeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eeeeee..........eeeeeee..........eee.hhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p3h B   4 GLYVGGFVDVVSCPKLEQELYLDPDQVTDYLPVTEPLPITIHLPETEVGWTLGLFQVSHGIFCTGAITSPAFLELASRLADTSHVARAPVPKEPLLEILHTWLPGLSLSSIHPREPSGPVFQHVSLCALGRRRGTVAVYGHDAEWVVSRFSSVSKSERAHILQHVSSCRLEDLSTPNFVSPLETL 196
                                    13        23        33        43||      54        64        74        84        94|      107       117    || 131       141       151       161       171       181       191     
                                                                   44|                                              94|                     122|                                                                     
                                                                    46                                               98                      127

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4P3H)

(no "CATH Domain" information available for 4P3H)

(no "Pfam Domain" information available for 4P3H)

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	Cis Peptide Bonds
		Leu A:34 - Pro A:35	[ RasMol ]
		Leu B:34 - Pro B:35	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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