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(-) Description

Title :  IN AND OUT THE MINOR GROOVE: INTERACTION OF AN AT RICH-DNA WITH THE CD27 DRUG
 
Authors :  F. J. Acosta-Reyes, C. Dardonville, H. P. De Koning, M. Natto, J. A. Sub J. L. Campos
Date :  08 Jan 14  (Deposition) - 11 Jun 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Dna Minor Groove Binding Drugs, All-At Dna, Dicationic Drug, Imidazoline Drug, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Acosta-Reyes, C. Dardonville, H. P. De Koning, M. Natto, J. A. Subirana, J. L. Campos
In And Out Of The Minor Groove: Interaction Of An At-Rich Dna With The Drug Cd27
Acta Crystallogr. , Sect. D V. D70 1614 2014
PubMed-ID: 24914972  |  Reference-DOI: 10.1107/S139900471400697X

(-) Compounds

Molecule 1 - D(AAAATTTT)
    Chains: A, B, C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MWB3Ligand/IonN1-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-N4-(4-((4,5-DIHYDRO-1H-IMIDAZOL-2-YL)AMINO)PHENYL)BENZENE-1,4-DIAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MWB2Ligand/IonN1-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-N4-(4-((4,5-DIHYDRO-1H-IMIDAZOL-2-YL)AMINO)PHENYL)BENZENE-1,4-DIAMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MWB2Ligand/IonN1-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-N4-(4-((4,5-DIHYDRO-1H-IMIDAZOL-2-YL)AMINO)PHENYL)BENZENE-1,4-DIAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:1 , DA A:2 , DA A:3 , DA A:4 , DT A:5 , DT A:6 , DT A:7 , DT A:8 , HOH A:202 , HOH A:211 , HOH A:213 , DA B:2 , DA B:3 , MWB B:101 , DT C:8BINDING SITE FOR RESIDUE MWB A 101
2AC2SOFTWAREDT A:8 , MWB A:101 , DA B:1 , DA B:2 , DA B:3 , DA B:4 , DT B:5 , HOH B:202 , HOH B:208 , DT C:5 , DT C:6 , DT C:7 , DT C:8 , MWB C:101BINDING SITE FOR RESIDUE MWB B 101
3AC3SOFTWAREDT B:5 , DT B:6 , DT B:7 , DT B:8 , MWB B:101 , DA C:1 , DA C:2 , DA C:3 , DA C:4 , DT C:5BINDING SITE FOR RESIDUE MWB C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OCD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OCD)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:8
                                      
                   4ocd A 1 AAAATTTT 8


Chain B from PDB  Type:DNA  Length:8
                                      
                   4ocd B 1 AAAATTTT 8


Chain C from PDB  Type:DNA  Length:8
                                      
                   4ocd C 1 AAAATTTT 8
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OCD)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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