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(-) Description

Title :  CRYSTAL STRUCTURE OF PTDH R301A
 
Authors :  S. K. Nair, J. R. Chekan
Date :  03 Dec 13  (Deposition) - 12 Mar 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann Fold, Phosphite Dehydrogenase, Phosphite, Dehydrogenation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Hung, E. J. Fogle, N. Garg, J. R. Chekan, S. K. Nair, W. A. Van Der Donk
Chemical Rescue And Inhibition Studies To Determine The Rol Of Arg301 In Phosphite Dehydrogenase.
Plos One V. 9 87134 2014
PubMed-ID: 24498026  |  Reference-DOI: 10.1371/JOURNAL.PONE.0087134

(-) Compounds

Molecule 1 - PHOSPHONATE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.20.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PTXD
    Mutation: YES
    Organism Scientific: PSEUDOMONAS STUTZERI
    Organism Taxid: 316
    Synonym: NAD-DEPENDENT PHOSPHITE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:76 , GLY A:77 , LEU A:100 , THR A:104 , GLY A:152 , MET A:153 , GLY A:154 , ALA A:155 , ILE A:156 , ALA A:175 , ALA A:176 , LYS A:177 , ALA A:207 , LEU A:208 , PRO A:209 , THR A:214 , PRO A:235 , CYS A:236 , ARG A:237 , ASP A:261 , HIS A:292 , GLY A:294 , HOH A:914 , HOH A:922 , HOH A:974 , HOH A:989 , HOH A:1002 , HOH A:1050 , HOH A:1052BINDING SITE FOR RESIDUE NAD A 800
2AC2SOFTWARELYS B:76 , GLY B:77 , THR B:104 , MET B:153 , GLY B:154 , ALA B:155 , ILE B:156 , ALA B:176 , LYS B:177 , ALA B:207 , LEU B:208 , PRO B:209 , THR B:214 , PRO B:235 , CYS B:236 , ARG B:237 , ASP B:261 , HIS B:292 , GLY B:294 , HOH B:916 , HOH B:919 , HOH B:943 , HOH B:1000 , HOH B:1008 , HOH B:1063 , HOH B:1075BINDING SITE FOR RESIDUE NAD B 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NU5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NU5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4NU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhh...eee........hhhhhhhhhh...eeee......hhhhhhh.....eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeee..hhhhhhhhhhh.....eeeee.....hhhhhhhhh.ee.hhhhhhhhh.eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhh..eeeeee..hhhhh..........hhhhhh...eee.......hhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nu5 A   2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVALEIERCAAQNILQALAGERPINAVNRLP 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....hhhhhhhhh....ee........hhhhhhhhh....eeee......hhhhhhh.....eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeee..hhhhhhhhhhh.....eeeee.....hhhhhhhhheee.hhhhhhhhh.eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhh..eeeeee..hhhhh..........hhhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nu5 B   4 KLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVALEIERCAAQNILQALAGERPINAVNR 327
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NU5)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTXD_PSEST | O69054: 4e5k 4e5m 4e5n 4e5p 4ebf 4nu6

(-) Related Entries Specified in the PDB File

4nu6