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(-) Description

Title :  THERMOLYSIN IN COMPLEX WITH UBTLN37
 
Authors :  S. G. Krimmer, A. Heine, G. Klebe
Date :  11 Oct 13  (Deposition) - 02 Apr 14  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym./Biol. Unit :  E
Keywords :  Protease, Metalloprotease, Hydrolysis Of Peptide Bonds, 2- Phosphoramidon, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Krimmer, M. Betz, A. Heine, G. Klebe
Methyl, Ethyl, Propyl, Butyl: Futile But Not For Water, As The Correlation Of Structure And Thermodynamic Signature Shows In A Congeneric Series Of Thermolysin Inhibitors.
Chemmedchem V. 4 833 2014
PubMed-ID: 24623396  |  Reference-DOI: 10.1002/CMDC.201400013

(-) Compounds

Molecule 1 - THERMOLYSIN
    Chains: E
    EC Number: 3.4.24.27
    Fragment: MATURE FORM (UNP RESIDUES 233-548)
    Organism Scientific: BACILLUS THERMOPROTEOLYTICUS
    Organism Taxid: 1427
    Synonym: THERMOSTABLE NEUTRAL PROTEINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric/Biological Unit (5, 13)
No.NameCountTypeFull Name
12GZ1Ligand/IonP-((((BENZYLOXY)CARBONYL)AMINO)METHYL)-N-((S)-4-METHYL-1-(NEOPENTYLAMINO)-1-OXOPENTAN-2-YL)PHOSPHONAMIDICACID
2CA4Ligand/IonCALCIUM ION
3DMS4Ligand/IonDIMETHYL SULFOXIDE
4GOL3Ligand/IonGLYCEROL
5ZN1Ligand/IonZINC ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS E:142 , HIS E:146 , GLU E:166 , 2GZ E:513BINDING SITE FOR RESIDUE ZN E 501
02AC2SOFTWAREASP E:138 , GLU E:177 , ASP E:185 , GLU E:187 , GLU E:190 , HOH E:601BINDING SITE FOR RESIDUE CA E 502
03AC3SOFTWAREASP E:57 , ASP E:59 , GLN E:61 , HOH E:619 , HOH E:620 , HOH E:627BINDING SITE FOR RESIDUE CA E 503
04AC4SOFTWARETYR E:193 , THR E:194 , ILE E:197 , ASP E:200 , HOH E:628 , HOH E:684BINDING SITE FOR RESIDUE CA E 504
05AC5SOFTWAREGLU E:177 , ASN E:183 , ASP E:185 , GLU E:190 , HOH E:645 , HOH E:658BINDING SITE FOR RESIDUE CA E 505
06AC6SOFTWAREILE E:1 , THR E:2 , GLY E:3 , GLN E:31 , ASN E:33BINDING SITE FOR RESIDUE DMS E 506
07AC7SOFTWARETYR E:66 , HIS E:216 , SER E:218 , TYR E:251 , HOH E:663BINDING SITE FOR RESIDUE DMS E 507
08AC8SOFTWARETYR E:110 , ASN E:112 , PHE E:114 , 2GZ E:513BINDING SITE FOR RESIDUE DMS E 508
09AC9SOFTWAREGLY E:95 , PRO E:184 , TRP E:186 , HOH E:655 , HOH E:783BINDING SITE FOR RESIDUE DMS E 509
10BC1SOFTWAREPHE E:114 , TRP E:115 , HIS E:146 , TYR E:157 , 2GZ E:513 , HOH E:609 , HOH E:646 , HOH E:648BINDING SITE FOR RESIDUE GOL E 510
11BC2SOFTWAREGLY E:109 , TYR E:110 , ASN E:111 , ASN E:112 , GLN E:158 , HOH E:894BINDING SITE FOR RESIDUE GOL E 511
12BC3SOFTWAREGLY E:247 , GLY E:248 , VAL E:255 , GLN E:273 , TYR E:274 , LEU E:275 , HOH E:632 , HOH E:664 , HOH E:672 , HOH E:687 , HOH E:849BINDING SITE FOR RESIDUE GOL E 512
13BC4SOFTWARETYR E:106 , ASN E:112 , ALA E:113 , PHE E:114 , TRP E:115 , VAL E:139 , HIS E:142 , GLU E:143 , HIS E:146 , TYR E:157 , GLU E:166 , LEU E:202 , ARG E:203 , HIS E:231 , ZN E:501 , DMS E:508 , GOL E:510 , HOH E:673 , HOH E:947BINDING SITE FOR RESIDUE 2GZ E 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N66)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu E:50 -Pro E:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N66)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N66)

(-) Exons   (0, 0)

(no "Exon" information available for 4N66)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4n66e_ E: Thermolysin                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeeeeee...ee.ee......eeeee.........ee.ee...ee.hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeee......eee....eeee........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.....ee..............ee..hhhhhh...hhhhh...hhhhhhh..hhhhhhhhhhhhhhheee..eee...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n66 E   1 ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N66)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N66)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu E:50 - Pro E:51   [ RasMol ]  
 

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  4n66
    Family and Domain Information: ProDom | SYSTERS
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  THER_BACTH | P00800
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  3.4.24.27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THER_BACTH | P00800: 1fj3 1fjo 1fjq 1fjt 1fju 1fjv 1fjw 1gxw 1hyt 1kei 1kjo 1kjp 1kkk 1kl6 1kr6 1kro 1ks7 1kto 1l3f 1lna 1lnb 1lnc 1lnd 1lne 1lnf 1os0 1pe5 1pe7 1pe8 1qf0 1qf1 1qf2 1thl 1tli 1tlp 1tlx 1tmn 1trl 1y3g 1z9g 1zdp 2a7g 2g4z 2tli 2tlx 2tmn 2whz 2wi0 3dnz 3do0 3do1 3do2 3eim 3f28 3f2p 3fb0 3fbo 3fcq 3fgd 3flf 3for 3fv4 3fvp 3fxp 3fxs 3ls7 3ms3 3msa 3msf 3msn 3n21 3nn7 3p7p 3p7q 3p7r 3p7s 3p7t 3p7u 3p7v 3p7w 3qgo 3qh1 3qh5 3ssb 3t2h 3t2i 3t2j 3t73 3t74 3t87 3t8c 3t8d 3t8f 3t8g 3t8h 3tli 3tmn 3zi6 4d91 4d9w 4h57 4mtw 4mwp 4mxj 4mzn 4n4e 4n5p 4oi5 4ow3 4tli 4tln 4tmn 4tnl 5a3y 5dpe 5dpf 5fsj 5fsp 5fss 5fxn 5js3 5jss 5jt9 5jvi 5jxn 5k7t 5l3u 5l41 5l8p 5lif 5lwd 5mnr 5n2t 5n2x 5n2z 5n31 5n34 5n3v 5n3y 5tli 5tln 5tmn 5un3 5uu7 5uu8 5uu9 5uua 5uub 5uuc 5uud 5uue 6tli 6tmn 7tli 7tln 8tli 8tln

(-) Related Entries Specified in the PDB File

4mtw 4mwp 4mxj 4mzn 4n4e 4n5p 4oi5