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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF4853 FAMILY PROTEIN (ACTODO_00621) FROM ACTINOMYCES ODONTOLYTICUS ATCC 17982 AT 2.65 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  03 Sep 13  (Deposition) - 16 Oct 13  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pf16145 Family, Duf4853, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function, Structural Genomics Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Actodo_00621) From Actinomyces Odontolyticus Atcc 17982 At 2. 65 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ACTODO_00621, ZP_02043769.1
    Organism Scientific: ACTINOMYCES ODONTOLYTICUS
    Organism Taxid: 411466
    Strain: ATCC 17982

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4SO45Ligand/IonSULFATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4SO43Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:42 , ARG A:91 , ALA A:162 , CYS A:163BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREGLN A:80 , ARG A:158 , ARG A:160 , GLU B:66 , THR B:67 , ARG B:106BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWARETYR A:48 , GLN A:52 , ILE A:56 , ASP A:140 , ASN A:141 , TYR A:142BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWARECYS A:82 , GLY A:83 , ARG A:91 , SER B:103 , ARG B:106BINDING SITE FOR RESIDUE SO4 B 301
5AC5SOFTWAREARG B:42 , ARG B:91 , ALA B:162 , CYS B:163BINDING SITE FOR RESIDUE SO4 B 302
6AC6SOFTWAREASP B:129 , ARG B:130 , ALA B:132 , HOH B:402BINDING SITE FOR RESIDUE SO4 B 303
7AC7SOFTWAREARG B:134BINDING SITE FOR RESIDUE CL B 304
8AC8SOFTWAREARG B:91BINDING SITE FOR RESIDUE CL B 305
9AC9SOFTWAREGLN B:52 , ASP B:140 , ASN B:141 , TYR B:142BINDING SITE FOR RESIDUE GOL B 306

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:82 -A:163
2B:82 -B:163

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MJG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MJG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MJG)

(-) Exons   (0, 0)

(no "Exon" information available for 4MJG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeeee.hhhhheeeee..eeeee..hhhhhhhhhhhh....eeeeee.........eeeeeee....eeeeee...eeeeeee...........hhhhh...hhhhhh..eeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mjg A  34 AEFVPFPERVSIEEYISRQLPEISSVAVPVAAETGGELTVmGLPYVQVCGTGDTQGYRVVGYTTVAPSmSFERLEKLVTENKPDWAVAVQVDKQIDRDATRGIQLIDNYGGLVEFKFSEDSIAVRSRSACLPTNKPLDDPGQFVLPSVEEAFPGmHVTISDNTNPDLHPVPTLTTGA 210
                                    43        53        63        73|       83        93       103       113       123       133       143       153       163       173       183    |  193       203       
                                                                   74-MSE                     102-MSE                                                                               188-MSE                  


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeeee.hhhhheeeee..eeeee..hhhhhhhhhhhh....eeeeee.........eeeeeee....eeeeee...eeeeeee...........hhhhh...hhhhhh..eeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mjg B  34 AEFVPFPERVSIEEYISRQLPEISSVAVPVAAETGGELTVmGLPYVQVCGTGDTQGYRVVGYTTVAPSmSFERLEKLVTENKPDWAVAVQVDKQIDRDATRGIQLIDNYGGLVEFKFSEDSIAVRSRSACLPTNKPLDDPGQFVLPSVEEAFPGmHVTISDNTNPDLHPVPTLTTGA 210
                                    43        53        63        73|       83        93       103       113       123       133       143       153       163       173       183    |  193       203       
                                                                   74-MSE                     102-MSE                                                                               188-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MJG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MJG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MJG)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MJG)

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