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(-) Description

Title :  CRYSTAL STRUCTURE OF THE IN VITRO TRANSCRIBED G. KAUSTOPHILUS TRNA-GLY
 
Authors :  J. C. Grigg, A. Ke
Date :  28 Aug 13  (Deposition) - 23 Oct 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rna-Rna Complex, Base Stacking, T-Loop, Rna Binding, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Grigg, A. Ke
Structural Determinants For Geometry And Information Decoding Of Trna By T Box Leader Rna.
Structure V. 21 2025 2013
PubMed-ID: 24095061  |  Reference-DOI: 10.1016/J.STR.2013.09.001

(-) Compounds

Molecule 1 - TRNA GLYCINE
    Chains: A, B
    Engineered: YES
    Other Details: IN VITRO TRANSCRIBED. OCCURS NATURALLY IN GEOBACILLUS KAUSTOPHILUS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1MG14Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREU A:19 , G A:58 , U A:59BINDING SITE FOR RESIDUE MG A 101
02AC2SOFTWAREG A:7 , U A:8 , A A:14BINDING SITE FOR RESIDUE MG A 102
03AC3SOFTWAREG A:51 , G A:52BINDING SITE FOR RESIDUE MG A 103
04AC4SOFTWAREG A:7 , G A:48 , G A:63 , U A:64BINDING SITE FOR RESIDUE MG A 104
05AC5SOFTWAREU A:8 , A A:9 , U A:12BINDING SITE FOR RESIDUE MG A 105
06AC6SOFTWAREG B:52 , U B:53BINDING SITE FOR RESIDUE MG B 101
07AC7SOFTWAREG B:70 , C B:71BINDING SITE FOR RESIDUE MG B 102
08AC8SOFTWAREU B:19 , G B:58 , U B:59BINDING SITE FOR RESIDUE MG B 103
09AC9SOFTWAREU B:16 , G B:58BINDING SITE FOR RESIDUE MG B 104
10BC1SOFTWAREU B:54 , C B:55 , G B:56BINDING SITE FOR RESIDUE MG B 105
11BC2SOFTWAREC B:71 , U B:72BINDING SITE FOR RESIDUE MG B 106
12BC3SOFTWAREG B:3 , G B:4BINDING SITE FOR RESIDUE MG B 107
13BC4SOFTWAREA B:9 , G B:10BINDING SITE FOR RESIDUE MG B 108
14BC5SOFTWAREU B:8 , A B:9 , U B:12BINDING SITE FOR RESIDUE MG B 109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MGM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MGM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4MGM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:63
                                                                                              
                  4mgm A  1 GCGGAAGUAGUUCAGUGGUAGAACACCACCGGUGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU 72
                                    10        20        30|   ||  49        59        69   
                                                        30|  42|                           
                                                         38   45                           


Chain B from PDB  Type:RNA  Length:63
                                                                                              
                  4mgm B  1 GCGGAAGUAGUUCAGUGGUAGAACACCACCGGUGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU 72
                                    10        20        30|   ||  49        59        69   
                                                        30|  42|                           
                                                         38   45
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MGM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MGM)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

4mgn CO-CRYSTAL STRUCTURE OF THE G. KAUSTOPHILUS GLYQS T BOX RIBOSWITCH STEM I IN COMPLEX WITH TRNA