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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GAS5 GRE MIMIC
 
Authors :  W. H. Hudson, E. A. Ortlund
Date :  21 Aug 13  (Deposition) - 24 Sep 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (3x)
Biol. Unit 4:  C,D  (1x)
Keywords :  Rna Double Helix, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. H. Hudson, M. R. Pickard, I. M. De Vera, E. G. Kuiper, M. Mourtada-Maarabouni, G. L. Conn, D. J. Kojetin, G. T. Williams, E. A. Ortlund
Conserved Sequence-Specific Lincrna-Steroid Receptor Interactions Drive Transcriptional Repression And Direct Cell Fate.
Nat Commun V. 5 5395 2014
PubMed-ID: 25377354  |  Reference-DOI: 10.1038/NCOMMS6395

(-) Compounds

Molecule 1 - GAS5 GREM FWD
    Chains: A, C
    Engineered: YES
    Other Details: RNA SYNTHESIS
    Synthetic: YES
 
Molecule 2 - GAS5 GREM REV
    Chains: B, D
    Engineered: YES
    Other Details: RNA SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): AB  
Biological Unit 2 (1x): AB  
Biological Unit 3 (3x):   CD
Biological Unit 4 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG B:3 , HOH B:202 , HOH B:219BINDING SITE FOR RESIDUE SO4 B 101
2AC2SOFTWAREG B:7 , C B:8 , HOH B:221BINDING SITE FOR RESIDUE SO4 B 102
3AC3SOFTWAREC D:8BINDING SITE FOR RESIDUE SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MCE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MCE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MCE)

(-) Exons   (0, 0)

(no "Exon" information available for 4MCE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:10
                                         
                  4mce A  1 CAGUGGUCUU 10
                                    10


Chain B from PDB  Type:RNA  Length:10
                                         
                  4mce B  1 AAGACUGCCU 10
                                    10


Chain C from PDB  Type:RNA  Length:10
                                         
                  4mce C  1 CAGUGGUCUU 10
                                    10


Chain D from PDB  Type:RNA  Length:11
                                          
                  4mce D  1 AAGACUGCCUG 11
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MCE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MCE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MCE)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MCE)

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  4mce
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