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(-) Description

Title :  CRYSTAL STRUCTURE OF METALLO-DNA DUPLEX CONTAINING CONSECUTIVE T-HG(II)-T BASE PAIRS
 
Authors :  J. Kondo, T. Yamada, C. Hirose, I. Okamoto, Y. Tanaka, A. Ono
Date :  04 Jun 13  (Deposition) - 05 Mar 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Metallo-Dna Duplex, B-Form Dna Duplex, T-Hg(Ii)-T Base Pair, B-Form Double Helix, Hg(Ii), Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kondo, T. Yamada, C. Hirose, I. Okamoto, Y. Tanaka, A. Ono
Crystal Structure Of Metallo Dna Duplex Containing Consecutive Watson-Crick-Like T-Hg(Ii) -T Base Pairs
Angew. Chem. Int. Ed. Engl. V. 53 2385 2014
PubMed-ID: 24478025  |  Reference-DOI: 10.1002/ANIE.201309066

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*TP*TP*TP*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1HG2Ligand/IonMERCURY (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:7 , HG A:102 , DA B:17 , DT B:18BINDING SITE FOR RESIDUE HG A 101
2AC2SOFTWAREDA A:5 , DT A:6 , HG A:101 , DT B:19BINDING SITE FOR RESIDUE HG A 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L24)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L24)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4L24)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  4l24 A  1 CGCGATTTCGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  4l24 B 13 CGCGATTTCGCG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L24)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L24)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  4l24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4l25 4l26