4KWX - JenaLib

Title :   LINEAR STRUCTURE OF THE HOLLIDAY JUNCTION SEQUENCE (TCGGCGCCGA)

Authors :   G. Skamrova, I. Laponogov, N. Campbell, S. Neidle

Date :   24 May 13 (Deposition) - 26 Nov 14 (Release) - 26 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Linear Dna, Palindrome Sequence, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Skamrova, I. Laponogov, N. Campbell, S. Neidle
Linear Structure Of The Holliday Junction Sequence (Tcggcgccga)
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 10)

Asymmetric Unit (1, 10)

No.	Name	Count	Type	Full Name
1	MG	10	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH A:201 , HOH A:202 , HOH B:201 , HOH B:202 , HOH C:101 , HOH C:102	BINDING SITE FOR RESIDUE MG A 101
02	AC2	SOFTWARE	DC A:5 , HOH A:205 , HOH A:255 , HOH E:201 , HOH E:204 , HOH E:205	BINDING SITE FOR RESIDUE MG A 102
03	AC3	SOFTWARE	HOH B:206 , HOH B:207 , HOH B:208 , HOH D:208 , HOH D:209 , HOH E:215	BINDING SITE FOR RESIDUE MG B 101
04	AC4	SOFTWARE	DC D:2 , HOH D:201 , HOH D:202 , HOH D:203 , HOH D:204 , HOH D:205	BINDING SITE FOR RESIDUE MG D 101
05	AC5	SOFTWARE	HOH A:206 , HOH A:207 , HOH B:205 , DC D:5 , HOH D:206 , HOH D:207	BINDING SITE FOR RESIDUE MG D 102
06	AC6	SOFTWARE	HOH A:203 , HOH A:204 , HOH B:203 , HOH B:204 , HOH E:202 , HOH E:203	BINDING SITE FOR RESIDUE MG E 101
07	AC7	SOFTWARE	DC E:5 , HOH E:206 , HOH E:207 , HOH E:208 , HOH E:209 , HOH E:210	BINDING SITE FOR RESIDUE MG E 102
08	AC8	SOFTWARE	HOH E:217 , HOH E:218 , HOH E:219 , HOH E:220 , HOH E:221 , HOH E:222	BINDING SITE FOR RESIDUE MG E 103
09	AC9	SOFTWARE	HOH E:211 , HOH E:212 , HOH E:213 , HOH E:214 , HOH F:208 , HOH F:209	BINDING SITE FOR RESIDUE MG F 101
10	BC1	SOFTWARE	HOH A:208 , HOH E:216 , HOH F:210 , HOH F:211 , HOH F:212 , HOH F:213	BINDING SITE FOR RESIDUE MG F 102

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:10
                                         
                  4kwx A  1 TCGGCGCCGA 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  4kwx B  1 TCGGCGCCGA 10
                                    10

Chain C from PDB  Type:DNA  Length:10
                                         
                  4kwx C  1 TCGGCGCCGA 10
                                    10

Chain D from PDB  Type:DNA  Length:10
                                         
                  4kwx D  1 TCGGCGCCGA 10
                                    10

Chain E from PDB  Type:DNA  Length:10
                                         
                  4kwx E  1 TCGGCGCCGA 10
                                    10

Chain F from PDB  Type:DNA  Length:10
                                         
                  4kwx F  1 TCGGCGCCGA 10
                                    10

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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