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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-SELENOURIDINE CONTAINING RNA
 
Authors :  S. Jiang, J. Gan, H. Sun, Z. Huang
Date :  18 Feb 13  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  2-Selenouridine, High Fidelity Base Pairing, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Jiang, J. Gan, H. Sun, Z. Huang
Crystal Structure Of 2-Selenouridine Containing Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RNA (5'-R(*GP*UP*GP*UP*AP*(RUS)P*AP*C)-3')
    Chains: A, B, D, E, C, F
    Engineered: YES
    Organism Common: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2RUS6Mod. Nucleotide1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-2-SELANYLPYRIMIDIN-4(1H)-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREC A:8 , HOH D:115 , A E:7 , HOH E:106BINDING SITE FOR RESIDUE K A 101
2AC2SOFTWAREG A:1 , U A:2 , HOH A:201 , HOH A:218 , G C:1 , U C:2 , HOH C:206BINDING SITE FOR RESIDUE K C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JAH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JAH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JAH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JAH)

(-) Exons   (0, 0)

(no "Exon" information available for 4JAH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:8
                                       
                  4jah A  1 GUGUAuAC  8
                                 |  
                                 6-RUS


Chain B from PDB  Type:RNA  Length:8
                                       
                  4jah B  9 GUGUAuAC 16
                                 |  
                                14-RUS


Chain C from PDB  Type:RNA  Length:8
                                       
                  4jah C  1 GUGUAuAC  8
                                 |  
                                 6-RUS


Chain D from PDB  Type:RNA  Length:8
                                       
                  4jah D  9 GUGUAuAC 16
                                 |  
                                14-RUS


Chain E from PDB  Type:RNA  Length:8
                                       
                  4jah E  1 GUGUAuAC  8
                                 |  
                                 6-RUS


Chain F from PDB  Type:RNA  Length:8
                                       
                  4jah F  9 GUGUAuAC 16
                                 |  
                                14-RUS
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JAH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JAH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JAH)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4JAH)

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  4jah
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3s49 4jab