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(-) Description

Title :  STRUCTURE OF A THERMOPHILIC ARX1
 
Authors :  G. Bange, I. Sinning
Date :  09 Jan 13  (Deposition) - 30 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Map, Methionine Aminopeptidase, Ribosome Biogenesis, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Van Noort, B. Bradatsch, M. Arumugam, S. Amlacher, G. Bange, C. Creevey, S. Falk, D. R. Mende, I. Sinning, E. Hurt, P. Bork
Consistent Mutational Paths Predict Eukaryotic Thermostability.
Bmc Evol Biol V. 13 7 2013
PubMed-ID: 23305080  |  Reference-DOI: 10.1186/1471-2148-13-7

(-) Compounds

Molecule 1 - PUTATIVE CURVED DNA-BINDING PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3) ROSETTA2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CTHT_0023380
    Organism Scientific: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:262 , LYS A:308 , HOH A:684 , HOH A:858BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREVAL A:63 , TYR A:64 , ARG A:65 , ASP A:66 , HOH A:728 , HOH A:862 , LYS B:282 , HOH B:694BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWAREARG B:262 , LYS B:308 , HOH B:680 , HOH B:828BINDING SITE FOR RESIDUE SO4 B 501
4AC4SOFTWARETHR C:168 , GLY C:169 , LYS C:174BINDING SITE FOR RESIDUE SO4 C 501
5AC5SOFTWAREARG C:262 , LYS C:308BINDING SITE FOR RESIDUE SO4 C 502
6AC6SOFTWAREARG D:262 , LYS D:308 , HOH D:859BINDING SITE FOR RESIDUE SO4 D 501
7AC7SOFTWARELYS A:181 , ARG D:316BINDING SITE FOR RESIDUE SO4 D 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IPA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp C:66 -Lys C:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IPA)

(-) Exons   (0, 0)

(no "Exon" information available for 4IPA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh........eeeeeeeeee...............hhhhh......eeeeeeeeee..eeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh....hhhhhhhhhhhhhhh...ee....eeeee.........eee.................eeeeeeeee.....eee......eeee........hhhhhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhh..eee...eee.....eeeeeeeeeee..eeeeee.....hhhhh.......hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ipa A  12 AISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRDKKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEGVPEVGDVWGVEVGCSLGSGKVKQFEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVIECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAWDLSKFKTDKKIEDEEILKILEQPLSK 383
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381  


Chain B from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.......eeeeeeeeee...............hhhhh......eeeeeeeeee..eeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhhhhh..ee...eeeeee.........eeee................eeeeeeeee.....eee......eeee........hhhhhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhh..eeee..eee.....eeeeeeeeeee..eeeeee.....hhhhh.......hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ipa B   8 ADNVAISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEGVPEVGDVWGVEVGCSLGSGKVKQFEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVIECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAWDLSKFKTDKKIEDEEILKILEQPLS 382
                                    17        27        37        47        57       |69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379   
                                                                                    65||                                                                                                                                                                                                                                                                                                                         
                                                                                     67|                                                                                                                                                                                                                                                                                                                         
                                                                                      69                                                                                                                                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh........eeeeeeeeee.............hhhhhh.......eeeeeeeeee..eeeeeeeeee.........eehhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh....hhhhhhhhhhhhhhhh..ee...eeeeee.........eeee................eeeeeeeee.....eee......eeee........hhhhhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhh..eeee..eee.....eeeeeeeeeee..eeeeee.....hhh.ee......hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ipa C   8 ADNVAISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRDKKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEGVPEVGDVWGVEVGCSLGSGKVKQFEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVIECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAWDLSKFKTDKKIEDEEILKILEQPLSK 383
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377      


Chain D from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......eeeeeeeeee..........................eeeeeeeeee..eeeeeeeeee.........eehhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhhhhh..ee....eeeee.........eee.................eeeeeeeee.....eee......eeee........hhhhhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhh..eee...eee.....eeeeeeeeeee..eeeeee.....hhh.ee......hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ipa D  12 AISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEGVPEVGDVWGVEVGCSLGSGKVKQFEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVIECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAWDLSKFKTDKKIEDEEILKILEQPLSKN 384
                                    21        31        41        51        61   ||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383 
                                                                                65|                                                                                                                                                                                                                                                                                                                            
                                                                                 68
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IPA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IPA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IPA)

(-) Gene Ontology  (2, 2)

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2q8k