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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF3887 FAMILY PROTEIN (RUMGNA_01855) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.25 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Nov 12  (Deposition) - 09 Jan 13  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Pf13026 Family Protein, Duf3887, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Rumgna_01855) From Ruminococcus Gnavus Atcc 29149 At 2. 25 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 29149
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 36-148
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric Unit (4, 26)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION
Biological Unit 1 (3, 40)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL16Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4SO412Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:0 , LYS A:113 , ASP A:114 , ASN A:131 , HOH A:322 , HOH A:323 , HOH A:363BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWARETHR A:75 , LYS A:76 , ASP A:139 , ASP A:141 , ASN A:143 , HOH A:361BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREGLY A:45BINDING SITE FOR RESIDUE CL A 203
04AC4SOFTWARELYS A:48 , HOH A:329BINDING SITE FOR RESIDUE CL A 204
05AC5SOFTWARELYS A:116 , LYS A:117 , GLU A:140 , HOH A:316BINDING SITE FOR RESIDUE GOL A 205
06AC6SOFTWAREGLU A:57 , GLU A:60 , ILE B:61 , HOH B:308BINDING SITE FOR RESIDUE GOL A 206
07AC7SOFTWAREARG A:52 , CYS A:106 , TYR A:108 , CL B:206BINDING SITE FOR RESIDUE GOL A 207
08AC8SOFTWARELEU A:82 , THR A:83 , GLU A:84 , LYS B:76BINDING SITE FOR RESIDUE GOL A 208
09AC9SOFTWARELYS A:40 , LYS A:48 , LYS B:40 , LYS B:48 , HOH B:311BINDING SITE FOR RESIDUE SO4 B 201
10BC1SOFTWAREGLY B:0 , LYS B:113 , ASP B:114 , ASN B:131 , HOH B:316 , HOH B:324BINDING SITE FOR RESIDUE SO4 B 202
11BC2SOFTWARELYS A:48 , ARG B:52 , CYS B:106 , TYR B:108 , HOH B:322BINDING SITE FOR RESIDUE SO4 B 203
12BC3SOFTWARETHR B:75 , LYS B:76 , ASP B:139 , ASP B:141 , ASN B:143BINDING SITE FOR RESIDUE SO4 B 204
13BC4SOFTWAREGLY B:45BINDING SITE FOR RESIDUE CL B 205
14BC5SOFTWAREGOL A:207 , LYS B:48BINDING SITE FOR RESIDUE CL B 206
15BC6SOFTWAREGLU B:84 , GLU B:85 , HOH B:314BINDING SITE FOR RESIDUE CL B 207
16BC7SOFTWAREASN B:133BINDING SITE FOR RESIDUE CL B 208
17BC8SOFTWAREGLN B:111 , GLY B:120 , HOH B:329BINDING SITE FOR RESIDUE GOL B 209
18BC9SOFTWARELYS B:117 , GLU B:140 , HOH B:317BINDING SITE FOR RESIDUE GOL B 210
19CC1SOFTWAREGLN B:97BINDING SITE FOR RESIDUE GOL B 211
20CC2SOFTWARELYS A:53 , GLU A:57 , GLN B:54 , ARG B:73 , ASP B:141 , ASN B:143 , HOH B:330BINDING SITE FOR RESIDUE GOL B 212

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HYZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HYZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4HYZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhh..hhhhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyz A   0 GEILKELPEGFDKETVRKQAmEDIEIAQSKDYESWKSRFTKDLQSSLTEESYDSYLKILEKQGEFKEFGKCTYLGQIKDNKKYGGVIIVVKYEEGNVNYSLAYDEDmNLVSFTm 149
                            ||      45        55|       65        75        85        95       105       115       125       135      |145   |
                            ||                 56-MSE                                                                               142-MSE  |
                            0|                                                                                                             149-MSE
                            37                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhh..hhhhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyz B   0 GEILKELPEGFDKETVRKQAmEDIEIAQSKDYESWKSRFTKDLQSSLTEESYDSYLKILEKQGEFKEFGKCTYLGQIKDNKKYGGVIIVVKYEEGNVNYSLAYDEDmNLVSFTm 149
                            ||      45        55|       65        75        85        95       105       115       125       135      |145   |
                            ||                 56-MSE                                                                               142-MSE  |
                            0|                                                                                                             149-MSE
                            37
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HYZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HYZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HYZ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4HYZ)

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        A7B2S7_RUMGN | A7B2S7: 2mc8

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