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(-) Description

Title :  DNA HOLLIDAY JUNCTION STABILIZED BY CHLORINE HALOGEN BOND. CL1J CONSTRUCT OF RELATED REFERENCE.
 
Authors :  P. S. Ho, M. Carter
Date :  27 Aug 12  (Deposition) - 31 Jul 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Dna Holliday Junction, Halogen Bond, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Carter, A. R. Voth, M. R. Scholfield, B. Rummel, L. C. Sowers, P. S. Ho
Enthalpy-Entropy Compensation In Biomolecular Halogen Bonds Measured In Dna Junctions.
Biochemistry V. 52 4891 2013
PubMed-ID: 23789744  |  Reference-DOI: 10.1021/BI400590H

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3')
    Chains: A, D
    Engineered: YES
    Other Details: SYNTHETICALLY ENGINEERED DNA SEQUENCE
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UCL)P*CP*GP*G)-3')
    Chains: B, C
    Engineered: YES
    Other Details: SYNTHETICALLY ENGINEERED DNA SEQUENCE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1UCL2Mod. Nucleotide5-CHLORO-2'-DEOXYURIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1UCL4Mod. Nucleotide5-CHLORO-2'-DEOXYURIDINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:10
                                         
                  4gsg A  1 CCGATACCGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  4gsg B 11 CCGGTAxCGG 20
                                  | 20
                                 17-UCL


Chain C from PDB  Type:DNA  Length:10
                                         
                  4gsg C 21 CCGGTAxCGG 30
                                  | 30
                                 27-UCL


Chain D from PDB  Type:DNA  Length:10
                                         
                  4gsg D 31 CCGATACCGG 40
                                    40
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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

2orf 2org 2orh 3tok 4gqd 4gre 4gs2 4gsi