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(-) Description

Title :  COMPLEX OF A BINUCLEAR RUTHENIUM COMPOUND D,D-([MU-(11,11')-BI(DPPZ)-(1,10-PHENANTHROLINE)4-RU2]4+) BOUND TO D(CGTACG)
 
Authors :  D. R. Boer, M. Coll
Date :  23 Aug 12  (Deposition) - 05 Mar 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Dna Recognition, Dna Binsinf, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Boer, L. Wu, P. Lincoln, M. Coll
Thread Insertion Of A Bis(Dipyridophenazine) Diruthenium Complex Into The Dna Double Helix By The Extrusion Of At Base Pairs And Cross-Linking Of Dna Duplexes.
Angew. Chem. Int. Ed. Engl. V. 53 1949 2014
PubMed-ID: 24449275  |  Reference-DOI: 10.1002/ANIE.201308070

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Other Details: ACQUIRED FROM BIOMERS (GERMANY)
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1RR21Ligand/Ion(MU-11,11'-BIDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-1KAPPA~2~N~4~,N~5~:2KAPPA~2~N~4'~,N~5'~)[TETRAKIS(1,10-PHENANTHROLINE-KAPPA~2~N~1~,N~10~)]DIRUTHENIUM
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1RR22Ligand/Ion(MU-11,11'-BIDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-1KAPPA~2~N~4~,N~5~:2KAPPA~2~N~4'~,N~5'~)[TETRAKIS(1,10-PHENANTHROLINE-KAPPA~2~N~1~,N~10~)]DIRUTHENIUM

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DG A:2 , DT A:3 , DA A:4 , DC A:5 , DG A:6 , DC B:1 , DG B:2 , DT B:3 , DA B:4 , DC B:5BINDING SITE FOR RESIDUE RR2 A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQJ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:6
                                    
                   4gqj A 1 CGTACG 6


Chain B from PDB  Type:DNA  Length:6
                                    
                   4gqj B 1 CGTACG 6
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GQJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4GQJ)

(-) Related Entries Specified in the PDB File

3qrn MONONUCLEAR RU-DPPZ BOUND TO DNA
3s80 MONONUCLEAR RU-DPPZ BOUND TO DNA
3u38 MONONUCLEAR RU-DPPZ BOUND TO DNA
4e1u MONONUCLEAR RU-DPPZ BOUND TO DNA
4e7y MONONUCLEAR RU-DPPZ BOUND TO DNA