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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GET5 UBIQUITIN-LIKE DOMAIN
 
Authors :  J. W. Chartron, D. G. Vandervelde, W. M. Clemons Jr.
Date :  19 Aug 12  (Deposition) - 21 Nov 12  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ubiquitin-Like Domain, Protein-Protein Interaction, Sgt2, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Chartron, D. G. Vandervelde, W. M. Clemons
Structures Of The Sgt2/Sgta Dimerization Domain With The Get5/Ubl4A Ubl Domain Reveal An Interaction That Forms A Conserved Dynamic Interface.
Cell Rep V. 2 1620 2012
PubMed-ID: 23142665  |  Reference-DOI: 10.1016/J.CELREP.2012.10.010

(-) Compounds

Molecule 1 - GOLGI TO ER TRAFFIC PROTEIN 5
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET33B
    Expression System Strain: NICO(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GET5, MDY2, TMA24, YOL111C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: UBIQUITIN-LIKE PROTEIN MDY2, MATING-DEFICIENT PROTEIN 2, TRANSLATION MACHINERY-ASSOCIATED PROTEIN 24

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GOC)

(-) Sites  (0, 0)

(no "Site" information available for 4GOC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GOC)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ala A:83 -Pro A:84
2Ala B:83 -Pro B:84
3Ala C:83 -Pro C:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GOC)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee....hhhhhhhhhhhh....hhhhheeee..ee.....hhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4goc A  73 SVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 148
                                    82        92       102       112       122       132       142      


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee....hhhhhhhhhhhh....hhhhheeee..ee.....hhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4goc B  73 SVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 148
                                    82        92       102       112       122       132       142      


Chain C from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee....hhhhhhhhhhhh....hhhhheeee..ee.....hhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4goc C  73 SVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 148
                                    82        92       102       112       122       132       142
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GOC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GOC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GOC)

(-) Gene Ontology  (11, 11)

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  Cis Peptide Bonds
    Ala A:83 - Pro A:84   [ RasMol ]  
    Ala B:83 - Pro B:84   [ RasMol ]  
    Ala C:83 - Pro C:84   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MDY2_YEAST | Q12285: 2lnz 2lxa 2lxc 2wpv 3lku 3vej 3zdm 4a20 4asw 4pwx 5bw8 5bwk

(-) Related Entries Specified in the PDB File

4god 4goe 4gof