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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF5037 FAMILY PROTEIN (RUMGNA_01148) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.55 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  13 Aug 12  (Deposition) - 03 Oct 12  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hypothetical Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Rumgna_01148) From Ruminococcus Gnavus Atcc 29149 At 2. 55 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RUMGNA_01148
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470
    Strain: ATCC 29149

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:75 , GLU A:112 , TYR A:122 , HOH A:401BINDING SITE FOR RESIDUE GOL A 301
2AC2SOFTWAREASN A:51 , GLU A:78 , ASP A:224 , LYS B:175 , GLY B:176 , LYS B:177 , GLU B:181BINDING SITE FOR RESIDUE GOL A 302
3AC3SOFTWAREHIS B:75 , GLU B:112 , TYR B:122 , TYR B:123 , ILE B:124 , HOH B:410BINDING SITE FOR RESIDUE GOL B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GL6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GL6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GL6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GL6)

(-) Exons   (0, 0)

(no "Exon" information available for 4GL6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..eeeeeee...........eeeeeee.......eeeeee.........eeee.hhhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhh..hhhhhhhhhhhhhhhh.........eeeeeeee.hhh...hhhhhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhh.......hhhhhhhhh...eeeeee.........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gl6 A  28 EISIKIETYLQEEYGEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEPNSEIEIIYDGYGQRLLAKQmESmIEEAISQAAENYYIQGDIIIPEEWQDIPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDASTmKGKTDEEEYQmYEEVYRDKLGGQALLYVYYLDHKSFEKAEKILEIFTSGDEGSNFEDIIEGQPYFGTImRYGSDKFDDNLEIFKAAKQGK 264
                                    37        47        57        67        77        87        97       107  |    117       127       137       147       157       167      |177       187       197       207       217       227       237     | 247       257       
                                                                                                         107-MSE                                                            174-MSE    185-MSE                                                   243-MSE                 
                                                                                                            110-MSE                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..eeeeeee...........eeeeeee.......eeeeee.........eeee.hhhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhh..hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.hhh...hhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhh.......hhhhhhhhh...eeeeee.........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gl6 B   0 GHENEISIKIETYLQEEYGEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEPNSEIEIIYDGYGQRLLAKQmESmIEEAISQAAENYYIQGDIIIPEEWQDIPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDASTmKGKTDEEEYQmYEEVYRDKLGGQALLYVYYLDHKSFEKAEKILEIFTSGDEGSNFEDIIEGQPYFGTImRYGSDKFDDNLEIFKAAKQGK 264
                            ||      33        43        53        63        73        83        93       103   |  |113       123       133       143       153       163       173|      183 |     193       203       213       223       233       243       253       263 
                            0|                                                                               107-MSE                                                            174-MSE    185-MSE                                                   243-MSE                 
                            25                                                                                  110-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GL6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GL6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GL6)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4GL6)

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