4F8V - JenaLib

Title :   CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE IN COMPLEX WITH SISOMICIN (P21212 FORM)

Authors :   J. Kondo, M. Koganei, T. Kasahara

Date :   18 May 12 (Deposition) - 15 Aug 12 (Release) - 05 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Decording, Ribosome, Rna-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Kondo, M. Koganei, T. Kasahara
Crystal Structure And Speciﬁ C Binding Mode Of Sisomicin To The Bacterial Ribosomal Decoding Site
Acs Med. Chem. Lett. 2012
PubMed: search | Reference-DOI: 10.1021/ML300145Y

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	C A:4 , G A:5 , U A:6 , C A:7 , A A:8 , G B:39 , A B:41 , G B:42 , U B:43	BINDING SITE FOR RESIDUE SIS A 101
2	AC2	SOFTWARE	G A:16 , A A:18 , G A:19 , U A:20 , C B:27 , G B:28 , U B:29 , C B:30 , A B:31 , C B:32	BINDING SITE FOR RESIDUE SIS B 101

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:21
                                                    
                  4f8v A  3 GCGUCACACCGGUGAAGUCGC 23
                                    12        22

Chain B from PDB  Type:RNA  Length:21
                                                    
                  4f8v B 26 GCGUCACACCGGUGAAGUCGC 46
                                    35        45

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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