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(-) Description

Title :  THREE-DIMENSIONAL DNA LATTICES WITH NON-CANONICAL BASE PAIRS
 
Authors :  P. J. Paukstelis, S. E. Muser
Date :  17 May 12  (Deposition) - 25 Jul 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Non-Canonical Dna, Dna Nanotechnology, Crystal Design, Parallel Dna, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Muser, P. J. Paukstelis
Three-Dimensional Dna Crystals With Ph-Responsive Noncanonical Junctions.
J. Am. Chem. Soc. V. 134 12557 2012
PubMed-ID: 22768973  |  Reference-DOI: 10.1021/JA3025033

(-) Compounds

Molecule 1 - DNA (5'- D(*G*CP*GP*AP*AP*AP*GP*GP*GP*CP*AP*CP*GP*TP*GP*CP*CP*CP*T)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NCO2Ligand/IonCOBALT HEXAMMINE(III)
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NCO4Ligand/IonCOBALT HEXAMMINE(III)

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:7 , DG A:8 , DC A:12 , DC A:17 , DC A:18 , NCO A:102 , HOH A:217 , HOH A:223 , HOH A:245 , HOH A:252BINDING SITE FOR RESIDUE NCO A 101
2AC2SOFTWAREDA A:6 , DG A:7 , DG A:8 , DG A:9 , NCO A:101 , HOH A:209 , HOH A:215 , HOH A:226 , HOH A:266BINDING SITE FOR RESIDUE NCO A 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F8I)

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:18
                                                 
                  4f8i A  2 CGAAAGGGCACGTGCCCT 19
                                    11
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F8I)

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(-) Pfam Domains  (0, 0)

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  4f8i
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4f8g