4F2Y - JenaLib

Title :   STRUCTURE OF 3'-FLUORO CYCLOHEXENYL NUCLEIC ACID DECAMER

Authors :   P. S. Pallan, M. Egli

Date :   08 May 12 (Deposition) - 30 May 12 (Release) - 13 Jun 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.59

Chains :   Asym./Biol. Unit : A,B

Keywords :   Fluoro Cyclohexenyl Nucleic Acid, F-Cena, Modified Dna, A-Form Dna, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. P. Seth, J. Yu, A. Jazayeri, P. S. Pallan, C. R. Allerson, M. E. Ostergaard, F. Liu, P. Herdewijn, M. Egli, E. E. Swayze
Synthesis And Antisense Properties Of Fluoro Cyclohexenyl Nucleic Acid (F-Cena), A Nuclease Stable Mimic Of 2'-Fluoro Rna.
J. Org. Chem. V. 77 5074 2012
PubMed-ID: 22591005 | Reference-DOI: 10.1021/JO300594B

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:301 , HOH A:302 , HOH A:303 , HOH A:304 , HOH A:305 , HOH B:402	BINDING SITE FOR RESIDUE MG A 201
2	AC2	SOFTWARE	HOH B:403 , HOH B:404 , HOH B:405 , HOH B:406 , HOH B:408	BINDING SITE FOR RESIDUE MG B 301

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:10
                                          
                 4f2y A 101 GCGTAtACGC 110
                                 | 110
                                 |    
                               106-XTF

Chain B from PDB  Type:DNA  Length:10
                                          
                 4f2y B 201 GCGTAtACGC 210
                                 | 210
                               206-XTF

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description