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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF1312 FAMILY PROTEIN (RUMGNA_02503) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Apr 12  (Deposition) - 20 Jun 12  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Of Pf07009 Family, Duf1312, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Rumgna_02503) From Ruminococcus Gnavus Atcc 29149 At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Vector Type: PLASMID
    Gene: RUMGNA_02503
    Organism Common: TBD
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470
    Strain: ATCC 29149

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2PE41Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
3ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:75 , CYS A:80 , CYS A:95 , HOH A:335BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS B:75 , CYS B:80 , CYS B:95 , HOH B:318BINDING SITE FOR RESIDUE ZN B 201
3AC3SOFTWAREASP A:50 , GLN A:51 , THR A:52 , GLU A:54 , GLN A:56 , TYR B:42 , ASP B:50 , GLN B:51 , THR B:52 , GLU B:54 , HOH B:315BINDING SITE FOR RESIDUE PE4 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ESN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ESN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4ESN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..eeeeeee....eeeee...eeeeee..eeeeeee....hhhhhh........eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4esn A  -3 YFQGAVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKmEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQG 106
                               ||   38        48        58        68 |      78        88        98        
                               0|                                   70-MSE                                
                               33                                                                         


Chain B from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee....eeeee...eeeeee..eeeeeee....hhhhhh........eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4esn B  -2 FQGAVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKmEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQG 106
                              ||    39        49        59        69|       79        89        99       
                              0|                                   70-MSE                                
                              33
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ESN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ESN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ESN)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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