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(-) Description

Title :  INTERACTIONS OF MN2+ WITH A NON-SELF-COMPLEMENTARY Z-TYPE DNA DUPLEX
 
Authors :  P. K. Mandal, S. Venkadesh, N. Gautham
Date :  27 Feb 12  (Deposition) - 28 Nov 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Z-Type Dna Double Helices, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Mandal, S. Venkadesh, N. Gautham
Interactions Of Mn(2+) With A Non-Self-Complementary Z-Type Dna Duplex
Acta Crystallogr. , Sect. F V. 68 1420 2012
PubMed-ID: 23192018  |  Reference-DOI: 10.1107/S1744309112041759

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*AP*CP*GP*CP*G)-3')
    Chains: A, C
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
    Chains: B, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:2 , HOH A:202 , DG C:4 , HOH C:101 , HOH C:102BINDING SITE FOR RESIDUE MN A 101
2AC2SOFTWAREDG A:4BINDING SITE FOR RESIDUE MN A 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DWY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:6
                                     
                  4dwy A  1 CACGCG  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  4dwy B  7 CGCGTG 12


Chain C from PDB  Type:DNA  Length:6
                                     
                  4dwy C  1 CACGCG  6


Chain D from PDB  Type:DNA  Length:6
                                     
                  4dwy D  7 CGCGTG 12
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  4dwy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3fq5 CRYSTAL STRUCTURE OF D(CACGCG).D(CGCGTG) WITH 10 MM MNCL2
3g2a STRUCTURE OF D(CACGCG).D(CGCGTG) GROWN IN PRESENCE OF 1MM MNCL2
3ulm X-RAY DIFFRACTION STUDIES OF RING CRYSTALS OBTAINED FOR D(CACGCG).D(CGCGTG): STAGE (II) HEXAGONAL PLATES WITH SPOT
3uln X-RAY DIFFRACTION STUDIES OF RING CRYSTALS OBTAINED FOR D(CACGCG).D(CGCGTG): STAGE (III) HEXAGONAL PLATES WITH INTENSE SPOTS AND A DEPRESSION
3ulo X-RAY DIFFRACTION STUDIES OF RING CRYSTALS OBTAINED FOR D(CACGCG).D(CGCGTG): STAGE (IV) HEXAGONAL RINGS
3um4 X-RAY DIFFRACTION STUDIES OF RING CRYSTALS OBTAINED FOR D(CACGCG).D(CGCGTG): STAGE (I) HEXAGONAL PLATES
4dy8