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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE ABC TRANSPORTER, ATP-BINDING PROTEIN FROM METHANOSARCINA MAZEI GO1
 
Authors :  V. N. Malashkevich, R. Bhosle, R. Toro, R. Seidel, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Date :  08 Feb 12  (Deposition) - 22 Feb 12  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgrc, Psi-Biology, New York Structural Genomics Research Consortium, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Bhosle, R. Toro, R. Seidel, S. C. Almo
Crystal Structure Of Putative Abc Transporter, Atp-Binding Protein From Methanosarcina Mazei Go1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABC TRANSPORTER, ATP-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON+RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MM_1088
    Organism Scientific: METHANOSARCINA MAZE
    Organism Taxid: 192952
    Strain: GO1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric/Biological Unit (2, 24)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
2MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:105 , TYR A:106 , TYR A:195 , HOH A:607 , HOH A:788 , HOH A:801BINDING SITE FOR RESIDUE 1PE A 500
2AC2SOFTWARELYS A:320 , LEU A:322 , ALA A:350 , VAL A:351 , LYS A:353 , PHE A:380 , HOH A:650 , HOH A:763 , HOH A:868 , THR B:346BINDING SITE FOR RESIDUE 1PE A 501
3AC3SOFTWAREASP B:105 , TYR B:106 , TYR B:195 , HOH B:835BINDING SITE FOR RESIDUE 1PE B 500
4AC4SOFTWAREALA B:350 , VAL B:351 , GLY B:352 , HOH B:802BINDING SITE FOR RESIDUE 1PE B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DN7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DN7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DN7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DN7)

(-) Exons   (0, 0)

(no "Exon" information available for 4DN7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
 aligned with Q8PXX8_METMA | Q8PXX8 from UniProtKB/TrEMBL  Length:407

    Alignment length:406
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401      
         Q8PXX8_METMA     2 QTEQVSLKKRAESAAEKKAAFGEDFELEKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSGSFLVLDNAVSHSTLKDKNVELMSTHKAMEKYEWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSMPVQTCLMLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIGGRLIARGEMIGNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVGMIIRGFLDVGIRGIPEELKEEIENTIAQTALGM 407
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...........hhhhh...........hhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhhh.........hhhhhhhhhh.....................................................................................................................................................................................................................................hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dn7 A   2 QTEQVSLKKRAESAAEKKAAFGEDFELEKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSGSFLVLDNAVSHSTLKDKNVELmSTHKAmEKYEWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSmPVQTCLmLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEmYIKKGGTLNFTmIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIGGRLIARGEmIGNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLmARGLTEDEAVGmIIRGFLDVGIRGIPEELKEEIENTIAQTALGm 407
                                    11        21        31        41        51        61        71        81        91     | 101       111       121       131       141|      151       161       171       181       191  |    201    |  211       221       231       241       251       261       271       281       291       301    |  311       321       331       341       351       361 |     371   |   381       391       401     |
                                                                                                                    91-MSE |                                          142-MSE  |                                          194-MSE     206-MSE                                                                                             306-MSE                                                  363-MSE     375-MSE                         407-MSE
                                                                                                                          97-MSE                                             149-MSE                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:406
 aligned with Q8PXX8_METMA | Q8PXX8 from UniProtKB/TrEMBL  Length:407

    Alignment length:406
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401      
         Q8PXX8_METMA     2 QTEQVSLKKRAESAAEKKAAFGEDFELEKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSGSFLVLDNAVSHSTLKDKNVELMSTHKAMEKYEWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSMPVQTCLMLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIGGRLIARGEMIGNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVGMIIRGFLDVGIRGIPEELKEEIENTIAQTALGM 407
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...........hhhhh...........hhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhhh.........hhhhhhhhhh.....................................................................................................................................................................................................................................hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dn7 B   2 QTEQVSLKKRAESAAEKKAAFGEDFELEKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSGSFLVLDNAVSHSTLKDKNVELmSTHKAmEKYEWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSmPVQTCLmLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEmYIKKGGTLNFTmIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIGGRLIARGEmIGNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLmARGLTEDEAVGmIIRGFLDVGIRGIPEELKEEIENTIAQTALGm 407
                                    11        21        31        41        51        61        71        81        91     | 101       111       121       131       141|      151       161       171       181       191  |    201    |  211       221       231       241       251       261       271       281       291       301    |  311       321       331       341       351       361 |     371   |   381       391       401     |
                                                                                                                    91-MSE |                                          142-MSE  |                                          194-MSE     206-MSE                                                                                             306-MSE                                                  363-MSE     375-MSE                         407-MSE
                                                                                                                          97-MSE                                             149-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DN7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DN7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DN7)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8PXX8_METMA | Q8PXX8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
biological process
    GO:0016226    iron-sulfur cluster assembly    The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.

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