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(-) Description

Title :  CRYSTAL STRUCTURE OF COMPUTATIONALLY DESIGNED PROTEIN P6D
 
Authors :  C. J. Lanci, C. M. Macdermaid, J. G. Saven
Date :  12 Jan 12  (Deposition) - 02 May 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B,C  (1x)
Biol. Unit 6:  D  (3x)
Keywords :  Alpha-Helix, Three-Helix Bundle, Coiled-Coil Protein, De Novo Design, Computational Protein Design, Computationally Designed Protein, Three Helix Coiled Coil, Acylated N-Terminus, Synthetic, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Lanci, C. M. Macdermaid, S. G. Kang, R. Acharya, B. North, X. Yang, X. J. Qiu, W. F. Degrado, J. G. Saven
Computational Design Of A Protein Crystal.
Proc. Natl. Acad. Sci. Usa V. 109 7304 2012
PubMed-ID: 22538812  |  Reference-DOI: 10.1073/PNAS.1112595109

(-) Compounds

Molecule 1 - COMPUTATIONALLY DESIGNED CRYSTAL FORMING PROTEIN P6D
    Chains: A, B, C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): ABC 
Biological Unit 6 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2NH24Mod. Amino AcidAMINO GROUP
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
Biological Unit 5 (2, 6)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2NH23Mod. Amino AcidAMINO GROUP
Biological Unit 6 (2, 6)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2NH23Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 4DAC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DAC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DAC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DAC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DAC)

(-) Exons   (0, 0)

(no "Exon" information available for 4DAC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4dac A  0 xEVYKLDANVKRLEKEVGKLEGEVARLx 27
                            |        9        19       |
                            |                         27-NH2
                            0-ACE                       


Chain B from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4dac B  0 xEVYKLDANVKRLEKEVGKLEGEVARLx 27
                            |        9        19       |
                            |                         27-NH2
                            0-ACE                       


Chain C from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4dac C  0 xEVYKLDANVKRLEKEVGKLEGEVARLx 27
                            |        9        19       |
                            |                         27-NH2
                            0-ACE                       


Chain D from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4dac D  0 xEVYKLDANVKRLEKEVGKLEGEVARLx 27
                            |        9        19       |
                            |                         27-NH2
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DAC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DAC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4DAC)

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 Related Entries

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