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(-) Description

Title :  CRYSTAL STRUCTURE OF RHODOCOCCUS EQUI VAPB
 
Authors :  C. Geerds, H. H. Niemann
Date :  24 Mar 14  (Deposition) - 02 Apr 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Virulence Associated Protein, Eight-Stranded Antiparallel Beta-Barrel, B-Barrel, Greek Key Motif, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Geerds, J. Wohlmann, A. Haas, H. H. Niemann
Structure Of Rhodococcus Equi Virulence-Associated Protein (Vapb) Reveals An Eight-Stranded Antiparallel [Beta]-Barrel Consisting Of Two Greek-Key Motifs
Acta Crystallogr. , Sect. F V. 70 866 2014
PubMed-ID: 25005079  |  Reference-DOI: 10.1107/S2053230X14009911

(-) Compounds

Molecule 1 - VIRULENCE ASSOCIATED PROTEIN VAPB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETITE N-HIS KAN
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 36-197
    Organism Scientific: RHODOCOCCUS EQUI
    Organism Taxid: 43767
    Other Details: RESIDUES 36-197 WERE EXPRESSED WITH AN N- TERMINAL HIS6 TAG. THE PROTEIN WAS DIGESTED WITH PROTEINASE K AND PURIFIED. THE N-TERMINUS WAS VERIFIED BY EDMAN DEGRADATION.
    Strain: PAM 1593

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CO2Ligand/IonCOBALT (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:106 , ASP A:116 , HOH A:2025BINDING SITE FOR RESIDUE CO A1198
2AC2SOFTWAREASP A:118 , HOH A:2035 , HOH A:2037 , HOH A:2103 , HOH A:2107BINDING SITE FOR RESIDUE CO A1199

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CV7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 4CV7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:111
 aligned with B4F366_RHOHA | B4F366 from UniProtKB/TrEMBL  Length:197

    Alignment length:111
                                    96       106       116       126       136       146       156       166       176       186       196 
         B4F366_RHOHA    87 EQQYDVHGNVISAAVYQKFHVYGPEDMVFDGDAGGLTIPGAGAFWGTLFTSDLQRLYKDTVSFQYNALGTYLNINFFDSSGGFLGHIQAGAVSAVVGVGGGSGSWHNWEVA 197
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeehhheeeeeeeee....eeeeeeeeeee.hhhhhhhhh.eeeee.....eeeeee.....eeeeeee........eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 4cv7 A  87 EQQYDVHGNVISAAVYQKFHVYGPEDMVFDGDAGGLTIPGAGAFWGTLFTSDLQRLYKDTVSFQYNALGTYLNINFFDSSGGFLGHIQAGAVSAVVGVGGGSGSWHNWEVA 197
                                    96       106       116       126       136       146       156       166       176       186       196
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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