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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN PA4485 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  S. A. Mcmahon, L. Moynie, H. Liu, F. Duthie, M. S. Alphey, J. H. Naismith
Date :  29 May 12  (Deposition) - 09 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.08
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Unknown Function, Gram-Negative Bacteria, Infectious Disease, Structure-Based Inhibitor Design (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Moynie, R. Schnell, S. A. Mcmahon, T. Sandalova, W. A. Boulkerou, J. W. Schmidberger, M. S. Alphey, C. Cukier, F. Duthie, J. Kopec, H. Liu A. Jacewicz, W. N. Hunter, J. H. Naismith, G. Schneider
The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies For Assessment Of Potential Targets In Early-Stage Drug Discovery.
Acta Crystallogr. , Sect. F V. 69 25 2013
PubMed-ID: 23295481  |  Reference-DOI: 10.1107/S1744309112044739

(-) Compounds

Molecule 1 - PA4485
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEHISTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 32-125
    Organism Scientific: PSEUDOMONAS AERUGINOSA PA01
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4AVR)

(-) Sites  (0, 0)

(no "Site" information available for 4AVR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AVR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:61 -Pro A:62
2Gly B:61 -Pro B:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AVR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AVR)

(-) Exons   (0, 0)

(no "Exon" information available for 4AVR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
 aligned with Q9HVT6_PSEAE | Q9HVT6 from UniProtKB/TrEMBL  Length:125

    Alignment length:95
                                    40        50        60        70        80        90       100       110       120     
         Q9HVT6_PSEAE    31 ADTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESLD 125
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhh...............eee........eeeeee.....eeeeeeee.......eeeeehhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4avr A   1 MDTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESLD  95
                                    10        20        30        40        50        60        70        80        90     


Chain B from PDB  Type:PROTEIN  Length:95
 aligned with Q9HVT6_PSEAE | Q9HVT6 from UniProtKB/TrEMBL  Length:125

    Alignment length:95
                                    40        50        60        70        80        90       100       110       120     
         Q9HVT6_PSEAE    31 ADTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESLD 125
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....................eee........eeeeee.....eeeeeeee.........eeehhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4avr B   1 MDTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESLD  95
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AVR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AVR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AVR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Gly A:61 - Pro A:62   [ RasMol ]  
    Gly B:61 - Pro B:62   [ RasMol ]  
 

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