4ZRB - JenaLib

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Title :   CRYSTAL STRUCTURE OF HYPOTHETICAL THIOESTERASE PROTEIN SP_1851 WITH COENZYME A FROM STREPTOCOCCUS PNEUMONIAE TIGR4

Authors :   Y. B. Khandokar, P. Srivastava, J. K. Forwood

Date :   12 May 15 (Deposition) - 27 May 15 (Release) - 03 Feb 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,D,E,H  (1x)
Biol. Unit 2: B,C,F,G  (1x)

Keywords :   Paai Thioesterase, Hotdog Fold, Streptococcus Pneumoniae, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. B. Khandokar, P. Srivastava, S. Sarker, C. M. Swarbrick, D. Aragao, N. Cowieson, J. K. Forwood
Structural And Functional Characterization Of The Paai Thioesterase From Streptococcus Pneumoniae Reveals A Dual Specificity For Phenylacetyl-Coa And Medium-Chain Fatty Acyl-Coas And A Novel Coa-Induced Fit Mechanism.
J. Biol. Chem. V. 291 1866 2016
PubMed-ID: 26538563 | Reference-DOI: 10.1074/JBC.M115.677484

Molecule 1 - HYPOTHETICAL THIOESTERASE PROTEIN SP_1851
	Chains	:	A, B, C, D, E, G, H, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SP_1851
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN ATCC BAA-334 / TIGR4)
	Organism Taxid	:	170187
	Strain	:	ATCC BAA-334 / TIGR4
	Synonym	:	PAAL THIOESTERASE

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A			D	E			H
Biological Unit 2 (1x)	:		B	C			F	G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	COA	4	Ligand/Ion	COENZYME A

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:42 , GLY A:44 , TYR A:75 , LEU A:76 , LYS A:77 , ALA A:78 , HOH A:209 , HOH A:211 , HOH A:217 , HOH A:234 , VAL D:67 , THR D:68 , PHE D:121 , HIS E:93 , GLY E:95 , ARG E:96 , THR E:97 , THR E:98 , HOH E:311 , HOH E:337 , ARG H:96	binding site for residue COA E 201
2	AC2	SOFTWARE	ALA B:42 , GLY B:44 , TYR B:75 , LEU B:76 , LYS B:77 , ALA B:78 , HOH B:210 , HOH B:235 , VAL C:67 , THR C:68 , LEU C:69 , PHE C:121 , HOH C:240 , ARG F:96 , HIS G:93 , GLY G:95 , ARG G:96 , THR G:97 , THR G:98 , HOH G:309 , HOH G:330 , HOH G:331	binding site for residue COA G 201
3	AC3	SOFTWARE	THR A:68 , LEU A:69 , PHE A:121 , ASN D:37 , ALA D:42 , GLY D:44 , TYR D:75 , LEU D:76 , LYS D:77 , ALA D:78 , HOH D:216 , HIS H:93 , GLY H:95 , ARG H:96 , THR H:97 , THR H:98 , HOH H:311 , HOH H:313 , HOH H:322 , HOH H:326	binding site for residue COA H 201
4	AC4	SOFTWARE	VAL B:67 , THR B:68 , LEU B:69 , PHE B:121 , ALA C:42 , GLY C:44 , TYR C:75 , LEU C:76 , LYS C:77 , ALA C:78 , HOH C:217 , HOH C:228 , HIS F:93 , GLY F:95 , ARG F:96 , THR F:97 , THR F:98 , HOH F:314 , HOH F:328 , ARG G:96	binding site for residue COA F 201

(no "SS Bond" information available for 4ZRB)

(no "Cis Peptide Bond" information available for 4ZRB)

(no "SAP(SNP)/Variant" information available for 4ZRB)

(no "PROSITE Motif" information available for 4ZRB)

(no "Exon" information available for 4ZRB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb A   4 FHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQR 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain B from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb B   4 FHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQR 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain C from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb C   4 FHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQR 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain D from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb D   4 FHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQRS 127
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain E from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb E  -2 SNAMKDFHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQ 125
                                     7        17        27        37        47        57        67        77        87        97       107       117

Chain F from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zrb F   0 AMKDFHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQ 125
                                     9        19        29        39        49        59        69        79        89        99       109       119

Chain G from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrb G   0 AMKDFHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQRS 127
                                     9        19        29        39        49        59        69        79        89        99       109       119

Chain H from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh...eeeeee..eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zrb H   1 MKDFHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQR 126
                                    10        20        30        40        50        60        70        80        90       100       110       120

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4ZRB)

(no "CATH Domain" information available for 4ZRB)

(no "Pfam Domain" information available for 4ZRB)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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