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(-) Description

Title :  CYP106A2
 
Authors :  S. Janocha, Y. Carius, R. Bernhardt, C. R. D. Lancaster
Date :  17 Mar 15  (Deposition) - 24 Feb 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Mono-Oxygenase, Cytochrome P450, 15-Beta-Hydroxylase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Janocha, Y. Carius, M. Hutter, C. R. Lancaster, R. Bernhardt
Crystal Structure Of Cyp106A2 In Substrate-Free And Substrate-Bound Form.
Chembiochem V. 17 852 2016
PubMed-ID: 26864272  |  Reference-DOI: 10.1002/CBIC.201500524
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME P450(MEG)
    Atcc: 13368
    Chains: A, B
    EC Number: 1.14.99.-, 1.14.15.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKKHC
    Expression System Strain: JM109
    Expression System Taxid: 562
    Gene: CYP106A2
    Organism Scientific: BACILLUS MEGATERIUM
    Organism Taxid: 1404
    Synonym: STEROID 15-BETA-HYDROXYLASE,STEROID 15-BETA-MONOOXYGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:88 , THR A:89 , HIS A:96 , ARG A:100 , MET A:151 , ALA A:243 , GLY A:244 , THR A:247 , THR A:248 , LEU A:294 , ARG A:296 , THR A:347 , PHE A:348 , HIS A:353 , CYS A:355 , GLY A:357 , HOH A:661 , HOH A:665 , HOH A:715 , HOH A:822binding site for residue HEM A 501
2AC2SOFTWAREPRO A:93 , HIS A:96 , ARG A:97 , PRO A:352 , HOH A:604 , HOH A:869 , VAL B:35binding site for residue ACT A 502
3AC3SOFTWAREILE B:88 , THR B:89 , HIS B:96 , ARG B:100 , ALA B:243 , GLY B:244 , THR B:247 , THR B:248 , LEU B:294 , ARG B:296 , MET B:319 , THR B:347 , PHE B:348 , PRO B:352 , HIS B:353 , CYS B:355 , GLY B:357 , HOH B:664 , HOH B:672 , HOH B:693 , HOH B:808binding site for residue HEM B 501
4AC4SOFTWAREVAL A:35 , PRO B:93 , HIS B:96 , ARG B:97 , HOH B:752 , HOH B:753binding site for residue ACT B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YT3)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Pro A:93 -Pro A:94
2Pro A:175 -Phe A:176
3Asn A:290 -Leu A:291
4Pro B:93 -Pro B:94
5Asn B:290 -Leu B:291

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YT3)

(-) Exons   (0, 0)

(no "Exon" information available for 4YT3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..hhhhhhhhhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee.....hhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhh....eeeeee...............eeeeehhhhh.................hhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhh.eeee....hhhh.ee......ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yt3 A   4 VIAVKEITRFKTRTEEFSPYAWCKRMLENDPVSYHEGTDTWNVFKYEDVKRVLSDYKHFSSVRKVPEKIQITESDPPDHRKRRSLLAAAFTPRSLQNWEPRIQEIADELIGQMDGTEIDIVASLASPLPIIVMADLMGVPSKDRLLFKKWVDTLFLPFQEEVDKLKQVAAKEYYQYLYPIVVQKRLNPADDIISDLLKSEVDGEMFTDDEVVRTTMLILGAGVETTSHLLANSFYSLLYDDKEVYQELHENLDLVPQAVEEMLRFRFNLIKLDRTVKEDNDLLGVELKEGDSVVVWMSAANMDEEMFEDPFTLNIHRPNNKKHLTFGNGPHFCLGAPLARLEAKIALTAFLKKFKHIEAVPSFQLEENLTDSATGQTLTSLPLKASRM 410
                                    13        23        33        43        53        63   ||   87        97       107       117       127   ||  138       148       158       168       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402        
                                                                                          67|                                              131|                                        176|                                                                                                                                                                                                                                     
                                                                                           82                                               133                                         181                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..hhhhhhhhhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee....hhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhh....eeeeee...............eeeeehhhhh.................hhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhh.eeee....hhhh.ee......ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yt3 B   4 VIAVKEITRFKTRTEEFSPYAWCKRMLENDPVSYHEGTDTWNVFKYEDVKRVLSDYKHFSSVRVPEKIQITESDPPDHRKRRSLLAAAFTPRSLQNWEPRIQEIADELIGQMDGGTEIDIVASLASPLPIIVMADLMGVPSKDRLLFKKWVDTLFLPFQEEVDKLKQVAAKEYYQYLYPIVVQKRLNPADDIISDLLKSEVDGEMFTDDEVVRTTMLILGAGVETTSHLLANSFYSLLYDDKEVYQELHENLDLVPQAVEEMLRFRFNLIKLDRTVKEDNDLLGVELKEGDSVVVWMSAANMDEEMFEDPFTLNIHRPNNKKHLTFGNGPHFCLGAPLARLEAKIALTAFLKKFKHIEAVPSFQLEENLTDSATGQTLTSLPLKASRM 410
                                    13        23        33        43        53        63  ||    88        98       108       118       128       138       148       158       168       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402        
                                                                                         66|                                                                                           176|                                                                                                                                                                                                                                     
                                                                                          82                                                                                            181
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YT3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YT3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YT3)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

4xzo 4XZO CONTAINS THE SAME PROTEIN COMPLEXED WITH ITS SUBSTRATE ABIETIC ACID.