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Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURE OF GET3 BOUND TO THE TRANSMEMBRANE DOMAIN OF PEP12

Authors :   A. Mateja, M. Paduch, H. -Y. Chang, A. Szydlowska, A. A. Kossiakoff, R. S R. J. Keenan

Date :   23 Jan 15 (Deposition) - 18 Mar 15 (Release) - 18 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G

Keywords :   Membrane Protein Targeting Complex, Hydrolase-Transport Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Mateja, M. Paduch, H. Y. Chang, A. Szydlowska, A. A. Kossiakoff, R. S. Hegde, R. J. Keenan
Protein Targeting. Structure Of The Get3 Targeting Factor I Complex With Its Membrane Protein Cargo.
Science V. 347 1152 2015
PubMed-ID: 25745174 | Reference-DOI: 10.1126/SCIENCE.1261671

Molecule 1 - ATPASE GET3
	Chains	:	A, B
	EC Number	:	3.6.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCDF1B
	Expression System Strain	:	BL21(DE3)/PRIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GET3, ARR4, YDL100C, D2371
	Mutation	:	YES
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
	Organism Taxid	:	559292
	Strain	:	ATCC 204508 / S288C
	Synonym	:	ARSENICAL PUMP-DRIVING ATPASE, ARSENITE-STIMULATED ATPASE, GOLGI TO ER TRAFFIC PROTEIN 3, GUIDED ENTRY OF TAIL-ANCHORED PROTEINS 3

Molecule 2 - ANTIBODY HEAVY CHAIN
	Chains	:	C, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	RH2.2
	Expression System Strain	:	BL21(DE3)/PRIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HOMO SAPIENS, SYNTHETIC CONSTRUCT
	Organism Taxid	:	9606, 32630
	Other Details	:	OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG ANTIBODY FRAGMENT, THE CDRS ARE COMPLETELY SYNTHETIC

Molecule 3 - ANTIBODY LIGHT CHAIN
	Chains	:	D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	RH2.2
	Expression System Strain	:	BL21(DE3)/PRIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HOMO SAPIENS, SYNTHETIC CONSTRUCT
	Organism Taxid	:	9606, 32630
	Other Details	:	OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG ANTIBODY FRAGMENT, THE CDRS ARE COMPLETELY SYNTHETIC

Molecule 4 - PEP12P
	Chains	:	G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)/PRIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 102-128
	Gene	:	VIN13_4407
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	764099
	Strain	:	VIN 13

		1	2	3	4	5	6	7
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 7)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	2	Ligand/Ion	MAGNESIUM ION
4	ZN	1	Ligand/Ion	ZINC ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:28 , VAL A:29 , GLY A:30 , LYS A:31 , THR A:32 , THR A:33 , ASN A:272 , PRO A:315 , CYS A:317 , ILE A:321 , PHE A:330 , MG A:402 , ATP A:404 , HOH A:506 , HOH A:509 , HOH A:592 , LYS B:26 , GLU B:245 , LEU B:247	binding site for residue ADP A 401
2	AC2	SOFTWARE	THR A:32 , ADP A:401 , ATP A:404 , HOH A:505 , HOH A:506 , HOH A:559	binding site for residue MG A 402
3	AC3	SOFTWARE	CYS A:285 , CYS A:288 , CYS B:285 , CYS B:288	binding site for residue ZN A 403
4	AC4	SOFTWARE	GLY A:27 , GLY A:28 , VAL A:29 , GLY A:30 , LYS A:31 , THR A:32 , THR A:33 , ASN A:57 , PRO A:169 , ASN A:272 , PRO A:315 , LEU A:316 , CYS A:317 , ILE A:321 , PHE A:330 , ADP A:401 , MG A:402 , HOH A:506 , HOH A:509 , HOH A:592 , HOH A:595 , LYS B:26 , GLY B:27 , GLU B:245 , LEU B:247	binding site for residue ATP A 404
5	AC5	SOFTWARE	LYS A:26 , GLU A:245 , PHE A:246 , LEU A:247 , GLY B:28 , VAL B:29 , GLY B:30 , LYS B:31 , THR B:32 , THR B:33 , ASN B:272 , PRO B:315 , LEU B:316 , CYS B:317 , ILE B:321 , PHE B:330 , MG B:402 , ATP B:403 , HOH B:545 , HOH B:557 , HOH B:611	binding site for residue ADP B 401
6	AC6	SOFTWARE	THR B:32 , ADP B:401 , ATP B:403 , HOH B:528 , HOH B:571 , HOH B:611	binding site for residue MG B 402
7	AC7	SOFTWARE	LYS A:26 , GLY A:27 , GLU A:245 , PHE A:246 , LEU A:247 , GLY B:27 , GLY B:28 , VAL B:29 , GLY B:30 , LYS B:31 , THR B:32 , THR B:33 , ASN B:57 , ASN B:272 , PRO B:315 , LEU B:316 , CYS B:317 , ILE B:321 , PHE B:330 , ADP B:401 , MG B:402 , HOH B:528 , HOH B:545 , HOH B:557 , HOH B:571 , HOH B:611 , HOH B:619	binding site for residue ATP B 403

Asymmetric/Biological Unit

No.	Residues
1	C:25	-	C:99
2	C:149	-	C:205
3	C:225	-	D:217
4	D:24	-	D:89
5	D:137	-	D:197
6	E:25	-	E:99
7	E:149	-	E:205
8	E:225	-	F:217
9	F:24	-	F:89
10	F:137	-	F:197

Asymmetric/Biological Unit

No.	Residues
1	Phe C:155	-	Pro C:156
2	Glu C:157	-	Pro C:158
3	Ser D:8	-	Pro D:9
4	Tyr D:143	-	Pro D:144
5	Phe E:155	-	Pro E:156
6	Glu E:157	-	Pro E:158
7	Ser F:8	-	Pro F:9
8	Tyr F:143	-	Pro F:144

(no "SAP(SNP)/Variant" information available for 4XTR)

(no "PROSITE Motif" information available for 4XTR)

(no "Exon" information available for 4XTR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh....eeeee.....hhhhhhh.......ee......eeeee.hhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhh.....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh.....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xtr A   5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMGALADLTGSIPGIDEALSFMEVMKHIKRQEQGTFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED 352
                                    14        24        34        44        54        64        74        84        94     ||127       137       147       160       170       180       190   ||  216       226       236       246       256       266       276    || 287       297       307       317       327       337       347     
                                                                                                                         100|                            155|                                194|                                                                   281|                                                                     
                                                                                                                          124                             159                                 211                                                                    283

Chain B from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh....eeeee.....hhhhhhh.......ee......eeee..hhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh......hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xtr B   4 TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353
                                    13        23        33        43        53        63        73        83        93       103|      132       142       152       162       172       182       192  ||   217       227       237       247       257       267       277||     292       302       312       322       332       342       352 
                                                                                                                             103|                                                                     195|                                                                278|                                                                     
                                                                                                                              123                                                                      211                                                                 284

Chain C from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhh.eeeeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeeee..eeeeeee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xtr C   4 EVQLVESGGGLVQPGGSLRLSCAASGFNLYYYSIHWVRQAPGKGLEWVASISPYSSSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGRWYRRALDYWGQGTLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133   ||  148       158       168       178       188       198       208       218       
                                                                                                                                                               137|                                                                                  
                                                                                                                                                                143

Chain D from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee........ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xtr D   2 DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain E from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhh.eeeeeeee.....eeeeeeeehhhheeee.......eeeeee....eeeeee...hhhhheeeeeeeee..eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xtr E   4 EVQLVESGGGLVQPGGSLRLSCAASGFNLYYYSIHWVRQAPGKGLEWVASISPYSSSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGRWYRRALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain F from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee........ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xtr F   2 DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain G from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4xtr G 266 RWRVYLLIVLLVMLLFIFLIMK 287
                                   275       285

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4XTR)

(no "CATH Domain" information available for 4XTR)

(no "Pfam Domain" information available for 4XTR)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Glu C:157 - Pro C:158	[ RasMol ]
		Glu E:157 - Pro E:158	[ RasMol ]
		Phe C:155 - Pro C:156	[ RasMol ]
		Phe E:155 - Pro E:156	[ RasMol ]
		Ser D:8 - Pro D:9	[ RasMol ]
		Ser F:8 - Pro F:9	[ RasMol ]
		Tyr D:143 - Pro D:144	[ RasMol ]
		Tyr F:143 - Pro F:144	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (10, 10)

Cis Peptide Bonds (8, 8)

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