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(-) Description

Title :  OXIDIZED L-ALPHA-GLYCEROPHOSPHATE OXIDASE FROM MYCOPLASMA PNEUMONIAE WITH FAD BOUND
 
Authors :  C. K. Elkhal, K. M. Kean, D. Parsonage, A. Claiborne, P. A. Karplus
Date :  11 Dec 14  (Deposition) - 04 Mar 15  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Flavoenzyme, Oxidase, Glycerol-3-Phosphate Oxidase, Glycerol-3- Phosphate Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Elkhal, K. M. Kean, D. Parsonage, S. Maenpuen, P. Chaiyen, A. Claiborne, P. A. Karplus
Structure And Proposed Mechanism Of L-Alpha-Glycerophosphat Oxidase From Mycoplasma Pneumoniae.
Febs J. V. 282 3030 2015
PubMed-ID: 25688572  |  Reference-DOI: 10.1111/FEBS.13233

(-) Compounds

Molecule 1 - L-ALPHA-GLYCEROPHOSPHATE OXIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Variant: DE3
    Gene: MPN_051, D09_ORF384, MP103
    Organism Scientific: MYCOPLASMA PNEUMONIAE (STRAIN ATCC 29342 / M129)
    Organism Taxid: 272634
    Strain: ATCC 29342 / M129

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2G3P1Ligand/IonSN-GLYCEROL-3-PHOSPHATE
3NI1Ligand/IonNICKEL (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , GLY A:12 , VAL A:13 , ILE A:14 , GLU A:33 , LYS A:34 , HIS A:35 , GLU A:41 , THR A:42 , SER A:43 , ALA A:45 , ASN A:46 , SER A:47 , GLY A:48 , VAL A:49 , HIS A:51 , THR A:175 , GLU A:176 , VAL A:177 , ALA A:208 , ALA A:209 , GLY A:210 , TYR A:212 , TYR A:234 , SER A:319 , ARG A:320 , MET A:346 , LYS A:347 , SER A:348 , PRO A:349 , GLY A:350 , LEU A:351 , THR A:352 , HOH A:550 , HOH A:556 , HOH A:558 , HOH A:563binding site for residue FAD A 401
2AC2SOFTWAREHIS A:59 , HOH A:541binding site for residue NI A 402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:294 -A:294

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:273 -Pro A:274
2Ser A:348 -Pro A:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X9M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X9M)

(-) Exons   (0, 0)

(no "Exon" information available for 4X9M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhh.....eeee................ee.........hhhhhhhhhhhhhhhhhhhhhee..eee..eeeee.hhhhhhhhhhhhhhhhhh..hhh.eeeeehhhhhhhh........eeeee...eeehhhhhhhhhhhhhhhh..eee....eeeeee.....eeeee.......eeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee..........eeeehhhhhh...eeee.....eeee...ee..hhhhh.....hhhhhhhhhhhhhh.......eeeeeeeeeeee......eeeee..eeeeeeee....hhhhhhhhhhhhhhhhh.............ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4x9m A   1 METRDVLIVGGGVIGCATAYELSQYKLKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHKLTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDIQMLSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNISKQVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQGELHLNSMVFMVPTIHGKGVIVSPMLDGNFLVGPTALDGVDKEATRYITKDAPCMLTKIGKHMVPSLNINNALISFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPGLTAAPAIVREAVRLLNWKLTKKPNWNGKYNLPWI 384
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X9M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X9M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X9M)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Y051_MYCPN | P75063: 4x9n

(-) Related Entries Specified in the PDB File

4x9n