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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM A/GREEN-WINGED TEAL/TEXAS/Y171/2006 INFLUENZA VIRUS
 
Authors :  H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Date :  28 Oct 14  (Deposition) - 25 Feb 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hemagglutinin, Influenza Virus, H10, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Structure And Receptor Binding Preferences Of Recombinant Hemagglutinins From Avian And Human H6 And H10 Influenza A Virus Subtypes.
J. Virol. V. 89 4612 2015
PubMed-ID: 25673707  |  Reference-DOI: 10.1128/JVI.03456-14

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1 CHAIN
    Chains: A, C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Strain: A/GREEN-WINGED TEAL/TEXAS/Y171/2006
 
Molecule 2 - HEMAGGLUTININ HA2 CHAIN
    Chains: B, D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Strain: A/GREEN-WINGED TEAL/TEXAS/Y171/2006

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:12 , THR A:14 , ASN A:28binding site for Mono-Saccharide NAG A 501 bound to ASN A 12
02AC2SOFTWAREASN A:28 , THR A:311 , LEU B:52binding site for Mono-Saccharide NAG A 502 bound to ASN A 28
03AC3SOFTWAREARG A:162 , GLY A:233 , ASN A:235binding site for Mono-Saccharide NAG A 503 bound to ASN A 235
04AC4SOFTWAREHIS B:75 , ASN B:79 , ASN B:82binding site for Mono-Saccharide NAG B 301 bound to ASN B 82
05AC5SOFTWAREASN B:147 , ASN B:154binding site for Mono-Saccharide NAG B 302 bound to ASN B 154
06AC6SOFTWAREASN C:12 , ASN C:28 , NAG C:502binding site for Mono-Saccharide NAG C 501 bound to ASN C 12
07AC7SOFTWAREASN C:28 , THR C:311 , NAG C:501binding site for Mono-Saccharide NAG C 502 bound to ASN C 28
08AC8SOFTWAREARG C:162 , GLY C:233 , ASN C:235binding site for Mono-Saccharide NAG C 503 bound to ASN C 235
09AC9SOFTWAREASN D:147 , ASN D:154binding site for Mono-Saccharide NAG D 201 bound to ASN D 154
10AD1SOFTWAREASN E:28 , THR E:311binding site for Mono-Saccharide NAG E 401 bound to ASN E 28
11AD2SOFTWAREARG E:162 , ASN E:235binding site for Mono-Saccharide NAG E 402 bound to ASN E 235
12AD3SOFTWAREHIS F:75 , ASN F:79 , ASN F:82binding site for Mono-Saccharide NAG F 301 bound to ASN F 82

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:4 -B:137
2A:42 -A:270
3A:54 -A:66
4A:87 -A:130
5A:274 -A:298
6B:144 -B:148
7C:4 -D:137
8C:42 -C:270
9C:54 -C:66
10C:87 -C:130
11C:274 -C:298
12D:144 -D:148
13E:4 -F:137
14E:42 -E:270
15E:54 -E:66
16E:87 -E:130
17E:274 -E:298
18F:144 -F:148

(-) Cis Peptide Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1Asn A:133 -Gly A:134
2Val A:216 -Asn A:217
3Asn A:217 -Gly A:218
4Asn C:133 -Gly C:134
5Val C:216 -Asn C:217
6Asn C:217 -Gly C:218
7Asn E:133 -Gly E:134
8Val E:216 -Asn E:217
9Asn E:217 -Gly E:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WSW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WSW)

(-) Exons   (0, 0)

(no "Exon" information available for 4WSW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee.....eee.....eee......hhhhhhhhhhhhhh.ee..eeee..........eee.hhhhhhhhhhh..eeeeee........eeeee.eeeee....ee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee...eee......eee..ee......ee.....eeee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw A   0 GDKICLGHHAVSNGTIVKTLTNEKEEVTNATETVESKSLDKLCMKSRNYKDLGSCHPIGMVIGTPACDLHLTGTWDTLIERDNSIAYCYPGATVNEEALRQKIMESGGIDKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDSAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQNNFVPVVGARPQVNGQSGRIDFHWTMVQPGDNITFSHNGGLIAPSRVSKLKGRGLGIQSGASVDNDCESKCFWKGGSINTKLPFQNLSPRTVGQCPKYVNKKSLLLATGMRNVPE 318
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309         


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeee....hhhhhhhhhh....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw B   1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNIINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHKCDDNCMESIRNNTYDHTQYREEALLNRLN 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain C from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee.....eee.....eee......hhhhhhhhhhhhhh.ee..eeee..........eee.hhhhhhhhhhh..eeeeee........eeeee.eeeee....ee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee...eee......eee..ee......ee.....eeee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw C   0 GDKICLGHHAVSNGTIVKTLTNEKEEVTNATETVESKSLDKLCMKSRNYKDLGSCHPIGMVIGTPACDLHLTGTWDTLIERDNSIAYCYPGATVNEEALRQKIMESGGIDKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDSAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQNNFVPVVGARPQVNGQSGRIDFHWTMVQPGDNITFSHNGGLIAPSRVSKLKGRGLGIQSGASVDNDCESKCFWKGGSINTKLPFQNLSPRTVGQCPKYVNKKSLLLATGMRNVPE 318
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309         


Chain D from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw D   1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNIINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHKCDDNCMESIRNNTYDHTQYREEALLNRLN 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain E from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee.....eee.....eee......hhhhhhhhhhhhhh.ee..eeee..........eee.hhhhhhhhhhh..eeeeee........eeeee.eeeee....ee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee...eee......eee..ee......ee.....eeee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw E   0 GDKICLGHHAVSNGTIVKTLTNEKEEVTNATETVESKSLDKLCMKSRNYKDLGSCHPIGMVIGTPACDLHLTGTWDTLIERDNSIAYCYPGATVNEEALRQKIMESGGIDKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDSAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQNNFVPVVGARPQVNGQSGRIDFHWTMVQPGDNITFSHNGGLIAPSRVSKLKGRGLGIQSGASVDNDCESKCFWKGGSINTKLPFQNLSPRTVGQCPKYVNKKSLLLATGMRNVPE 318
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309         


Chain F from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeee....hhhhhhhhhh....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsw F   1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNIINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHKCDDNCMESIRNNTYDHTQYREEALLNRLN 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WSW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WSW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WSW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4WSW)

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    Asn E:133 - Gly E:134   [ RasMol ]  
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 Related Entries

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(-) Related Entries Specified in the PDB File

4wsr 4wss 4wst 4wsu 4wsv 4wsx