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(-) Description

Title :  STRUCTURE OF THE HUMAN SMOOTHENED RECEPTOR IN COMPLEX WITH SAG1.5
 
Authors :  C. Wang, H. Wu, T. Evron, E. Vardy, G. W. Han, X. -P. Huang, S. J. Hufeisen, T. J. Mangano, D. J. Urban, V. Katritch, V. Cherezov, M. G. Caron, B. L. R R. C. Stevens, Gpcr Network (Gpcr)
Date :  31 May 14  (Deposition) - 23 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Human Smoothened Receptor, Agonist, Novel Protein Engineering, Gpcr Network, Membrane Protein, Psi-Biology, Structural Genomics, Gpcr, Membrane, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, H. Wu, T. Evron, E. Vardy, G. W. Han, X. P. Huang, S. J. Hufeisen, T. J. Mangano, D. J. Urban, V. Katritch, V. Cherezov, M. G. Caron, B. L. Roth, R. C. Stevens
Structural Basis For Smoothened Receptor Modulation And Chemoresistance To Anticancer Drugs.
Nat Commun V. 5 4355 2014
PubMed-ID: 25008467  |  Reference-DOI: 10.1038/NCOMMS5355

(-) Compounds

Molecule 1 - SMOOTHENED HOMOLOG/SOLUBLE CYTOCHROME B562 CHIMERIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Fragment: UNP Q99835 RESIDUES 190-433, P0ABE7 RESIDUES 23-128, Q99835 RESIDUES 441-555
    Mutation: YES
    Organism Scientific: HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 9606, 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SG81Ligand/Ion3-CHLORO-4,7-DIFLUORO-N-[TRANS-4-(METHYLAMINO)CYCLOHEXYL]-N-[3-(PYRIDIN-4-YL)BENZYL]-1-BENZOTHIOPHENE-2-CARBOXAMIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SG82Ligand/Ion3-CHLORO-4,7-DIFLUORO-N-[TRANS-4-(METHYLAMINO)CYCLOHEXYL]-N-[3-(PYRIDIN-4-YL)BENZYL]-1-BENZOTHIOPHENE-2-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:219 , PRO A:220 , LEU A:221 , PHE A:222 , MET A:301 , GLY A:383 , ASP A:384 , TYR A:394 , LYS A:395 , HIS A:470 , ASP A:473 , GLN A:477 , TRP A:480 , GLU A:481 , PHE A:484 , PRO A:513 , GLU A:518BINDING SITE FOR RESIDUE SG8 A 1201

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:193 -A:213
2A:217 -A:295
3A:314 -A:390
4A:490 -A:507

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Val A:195 -Pro A:196
2Tyr A:262 -Pro A:263
3Glu A:305 -Pro A:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QIN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QIN)

(-) Exons   (0, 0)

(no "Exon" information available for 4QIN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:447
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.............eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qin A  192 QCEVPLVRTDNPKSWYEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLAASKINETMLRLGIFGFLAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCR  551
                                   201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431 ||   1008      1018      1028      1038      1048      1058      1068      1078      1088      1098       442       452       462       472       482       492||     514       524       534       544       
                                                                                                                                                                                                                                                                           433|                                                                                                     1106|                                                 493|                                             
                                                                                                                                                                                                                                                                           1001                                                                                                       441                                                  506
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QIN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QIN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QIN)

(-) Gene Ontology  (107, 107)

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  4qin
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  C562_ECOLX | P0ABE7
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  SMO_HUMAN | Q99835
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi
        SMO_HUMAN | Q99835: 4jkv 4n4w 4o9r 4qim 5l7d 5l7i 5v56 5v57

(-) Related Entries Specified in the PDB File

4o9r HUMAN SMOOTHENED RECEPTOR STRUCTURE IN COMPLEX WITH CYCLOPAMINE RELATED ID: GPCR-131 RELATED DB: TARGETTRACK
4qim