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(-) Description

Title :  MURINE NEUROGLOBIN UNDER 30 BAR PRESSURE NITROUS OXIDE
 
Authors :  N. Colloc'H, T. Prange, B. Vallone
Date :  19 Dec 13  (Deposition) - 24 Sep 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Globin, Oxygen Storage-Transport Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Abraini, G. Marassio, H. N. David, B. Vallone, T. Prange, N. Colloc'H
Crystallographic Studies With Xenon And Nitrous Oxide Provide Evidence For Protein-Dependent Processes In The Mechanisms Of General Anesthesia
Anesthesiology V. 121 1018 2014
PubMed-ID: 25211169  |  Reference-DOI: 10.1097/ALN.0000000000000435

(-) Compounds

Molecule 1 - NEUROGLOBIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NGB
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2N2O5Ligand/IonNITROUS OXIDE
3SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:41 , PHE A:42 , TYR A:44 , HIS A:64 , LYS A:67 , VAL A:68 , TYR A:88 , LEU A:92 , LYS A:95 , HIS A:96 , VAL A:101 , N2O A:206 , HOH A:307 , HOH A:312 , HOH A:328BINDING SITE FOR RESIDUE HEM A 201
2AC2SOFTWARESER A:19 , PRO A:20 , LEU A:21 , GLU A:22 , ARG A:66 , HOH A:353BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWARELYS A:67 , TYR A:88 , SER A:91BINDING SITE FOR RESIDUE N2O A 203
4AC4SOFTWAREPHE A:28 , ALA A:29 , PHE A:32 , PRO A:52 , SER A:55 , LEU A:56 , PHE A:61 , HOH A:323BINDING SITE FOR RESIDUE N2O A 204
5AC5SOFTWARELEU A:113 , TYR A:137 , VAL A:140BINDING SITE FOR RESIDUE N2O A 205
6AC6SOFTWARELEU A:27 , VAL A:109 , TYR A:137 , HEM A:201BINDING SITE FOR RESIDUE N2O A 206
7AC7SOFTWARESER A:17 , MET A:69 , ASP A:73 , HOH A:315BINDING SITE FOR RESIDUE N2O A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O4Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O4Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O4Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O4Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4O4Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4z A   3 RPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGWDG 150
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O4Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O4Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O4Z)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NGB_MOUSE | Q9ER97: 1q1f 1w92 2vry 3gk9 3gkt 3gln 4mu5 4nzi 4o1t 4o2g 4o35 4o4t 5eet 5eoh 5eqm 5eu2 5ev5 5eyj 5eys 5f0b 5f2a

(-) Related Entries Specified in the PDB File

4nwe
4nwh
4nxa
4nxc
4o4t MURINE NEUROGLOBIN UNDER 30 BAR XENON PRESSURE