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(-) Description

Title :  CRYSTAL STRUCTURE OF A MANGANESE DEPENDENT ISATIN HYDROLASE
 
Authors :  K. Bjerregaard-Andersen, T. Sommer, J. K. Jensen, B. Jochimsen, M. Etz J. P. Morth
Date :  31 Jan 13  (Deposition) - 20 Feb 13  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Manganese Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Bjerregaard-Andersen, T. Sommer, J. K. Jensen, B. Jochimsen, M. Etzerodt, J. P. Morth
A Proton Wire And Water Channel Revealed In The Crystal Structure Of Isatin Hydrolase.
J. Biol. Chem. V. 289 21351 2014
PubMed-ID: 24917679  |  Reference-DOI: 10.1074/JBC.M114.568824

(-) Compounds

Molecule 1 - ISATIN HYDROLASE B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SIAM614_09648
    Organism Scientific: LABRENZIA AGGREGATA IAM 12614
    Organism Taxid: 384765

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2MN2Ligand/IonMANGANESE (II) ION
3NA3Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:73 , HIS A:77 , ASP A:79 , HOH A:473 , HOH A:520BINDING SITE FOR RESIDUE MN A 301
2AC2SOFTWAREPHE A:41 , PHE A:209 , PHE B:62BINDING SITE FOR RESIDUE NA A 302
3AC3SOFTWAREGLN A:201 , GLN B:201 , HOH B:477 , HOH B:478 , HOH B:489 , HOH B:528BINDING SITE FOR RESIDUE CA B 301
4AC4SOFTWAREHIS B:73 , HIS B:77 , ASP B:79 , HOH B:507 , HOH B:508 , HOH B:529BINDING SITE FOR RESIDUE MN B 302
5AC5SOFTWAREPHE A:62 , PHE A:63 , PHE B:41 , PHE B:209BINDING SITE FOR RESIDUE NA B 303
6AC6SOFTWAREHOH A:509 , TRP B:67BINDING SITE FOR RESIDUE NA B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:206 -Pro A:207
2Glu B:206 -Pro B:207

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0N)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..eeeee.........................eeeeeeeee..eeeeeeeeeeee.....eee.hhhhhhhh..........hhhh.eeeeeeeehhhhhhhh...eehhhhhhhhhhhhh......eeeee.hhhhhh.hhhhhhhee..ee...eehhhhhhhhhhh...eeee........hhhhh...hhhhhhhhhh..eeee...hhhhh....eeee..........eee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0n A   2 SAQSALSGLGAKLLSGEVEVVDCTGVLGPNTPILQLPPDFAKNTPKVEIHKISEYDSDGPFFAWNWMVLGEHSGTHFDAPHHWITGKDYSDGFTDTLDVQRLIAPVNVIDCSKESAADPDFLLTADLIKAWEAEHGEIGAGEWVVMRTDWDKRAGDEAAFLNADETGPHSPGPTPDAIEYLLSKKIVGWGSQCIGTDAGQAGGMEPPFPAHNLLHRDNCFGLASLANLDKLPAKGAILIAAPLKIERGTGSPIRALALVPK 262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..eeeee.........................eeeeeeeee..eeeeeeeeeeee.....eee.hhhhhhhh..........hhhh.eeeeeeeehhhhhhhh...eehhhhhhhhhhhhh......eeeee.hhhhhh.hhhhhhhee..ee...eehhhhhhhhhhh...eee.......hhhhhhh...hhhhhhhhhh..eeee...hhhhh....eeee..........eee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0n B   2 SAQSALSGLGAKLLSGEVEVVDCTGVLGPNTPILQLPPDFAKNTPKVEIHKISEYDSDGPFFAWNWMVLGEHSGTHFDAPHHWITGKDYSDGFTDTLDVQRLIAPVNVIDCSKESAADPDFLLTADLIKAWEAEHGEIGAGEWVVMRTDWDKRAGDEAAFLNADETGPHSPGPTPDAIEYLLSKKIVGWGSQCIGTDAGQAGGMEPPFPAHNLLHRDNCFGLASLANLDKLPAKGAILIAAPLKIERGTGSPIRALALVPK 262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0N)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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