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(-) Description

Title :  STRUCTURE ANALYSIS OF GERANYL DIPHOSPHATE METHYLTRANSFERASE IN COMPLEX WITH SAM
 
Authors :  O. Ariyawutthiphan, T. Ose, A. Minami, Y. G. Gao, M. Yao, H. Oikawa, I. Ta
Date :  17 May 12  (Deposition) - 31 Oct 12  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Alpha/Beta, Rossmann Fold, Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Ariyawutthiphan, T. Ose, A. Minami, S. Sinde, M. Tsuda, Y. -G. Gao, M. Yao, H. Oikawa, I. Tanaka
Structure Analysis Of Geranyl Pyrophosphate Methyltransferase And The Proposed Reaction Mechanism Of Sam-Dependent C-Methylation
Acta Crystallogr. , Sect. D V. 68 1558 2012
PubMed-ID: 23090405  |  Reference-DOI: 10.1107/S0907444912038486

(-) Compounds

Molecule 1 - GERANYL DIPHOSPHATE 2-C-METHYLTRANSFERASE
    Chains: A
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GDPMT
    Organism Scientific: STREPTOMYCES LASALIENSIS
    Organism Taxid: 324833
    Synonym: SAM DEPENDENT METHYLTRANSFERASE, GPP METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SAM1Ligand/IonS-ADENOSYLMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1SAM6Ligand/IonS-ADENOSYLMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:57 , GLY A:113 , GLY A:115 , THR A:135 , LEU A:136 , GLN A:140 , CYS A:162 , ASN A:163 , MET A:164 , GLU A:181 , SER A:182 , TYR A:185 , VAL A:186BINDING SITE FOR RESIDUE SAM A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F84)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F84)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F84)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F84)

(-) Exons   (0, 0)

(no "Exon" information available for 4F84)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhhhhhhhhhhhhhheeeeeeeeeeeeee.hhhh..hhhhhhhhhhhh....hhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhh.......hhhhhhhhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f84 A  53 GLYHHHYGIGAVDHAALGDPGDGGYEARLIAELHRLESAQAEFLLDHLGPVGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVCNMLDTPFEKGTVAASWNNESSMYVDLHDVFAEHSRFLRVGGRYVTVTGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPQTVVDLTPETLPYWELRATSSLVTGIEEAFIESYRDGSFQYVLIAADRV 300
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F84)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F84)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F84)

(-) Gene Ontology  (6, 6)

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  4f84
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPPMT_STRLS | D3KYU3: 4f85 4f86

(-) Related Entries Specified in the PDB File

4f85 4f86