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(-) Description

Title :  CRYSTAL STRUCTURE OF COLLAGEN-MODEL PEPTIDE, (POG)3-PRG-(POG)4
 
Authors :  K. Okuyama, M. Haga, K. Noguchi, T. Tanaka
Date :  06 Dec 13  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen-Helix, Hsp47 Binding, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Okuyama, M. Haga, K. Noguchi, T. Tanaka
Preferred Side-Chain Conformation Of Arginine Residues In A Triple-Helical Structure.
Biopolymers V. 101 1000 2014
PubMed-ID: 24615532  |  Reference-DOI: 10.1002/BIP.22478

(-) Compounds

Molecule 1 - COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: THIS PEPTIDE APPEARS MOST FREQUENTLY IN NATIVE COLLAGEN.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 21)

Asymmetric/Biological Unit (1, 21)
No.NameCountTypeFull Name
1HYP21Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 3WN8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WN8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WN8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WN8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WN8)

(-) Exons   (0, 0)

(no "Exon" information available for 3WN8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ........................ Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  3wn8 A  1 PpGPpGPpGPRGPpGPpGPpGPpG 24
                             |  |  |10   |  | 20  | 
                             |  |  |     |  |  |  | 
                             2-HYP |     |  |  |  | 
                                5-HYP    |  |  |  | 
                                   8-HYP |  |  |  | 
                                        14-HYP |  | 
                                           17-HYP | 
                                              20-HYP
                                                 23-HYP


Chain B from PDB  Type:PROTEIN  Length:23
                                                      
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....................... Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                  3wn8 B  1 PpGPpGPpGPRGPpGPpGPpGPp 23
                             |  |  |10   |  | 20  |
                             |  |  |     |  |  |  |
                             2-HYP |     |  |  |  |
                                5-HYP    |  |  |  |
                                   8-HYP |  |  |  |
                                        14-HYP |  |
                                           17-HYP |
                                              20-HYP
                                                 23-HYP


Chain C from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ........................ Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  3wn8 C  1 PpGPpGPpGPRGPpGPpGPpGPpG 24
                             |  |  |10   |  | 20  | 
                             |  |  |     |  |  |  | 
                             2-HYP |     |  |  |  | 
                                5-HYP    |  |  |  | 
                                   8-HYP |  |  |  | 
                                        14-HYP |  | 
                                           17-HYP | 
                                              20-HYP
                                                 23-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WN8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WN8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WN8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WN8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3b0s THE SIMILAR COLLAGEN-LIKE PEPTIDE