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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE SYNTHETIC GCN4 THIOESTER COILED COIL PEPTIDE
 
Authors :  A. Shahar, R. Zarivach, G. Ashkenasy
Date :  24 Mar 13  (Deposition) - 12 Feb 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Dadon, M. Samiappan, A. Shahar, R. Zarivach, G. Ashkenasy
A High-Resolution Structure That Provides Insight Into Coiled-Coil Thiodepsipeptide Dynamic Chemistry
Angew. Chem. Int. Ed. Engl. V. 52 9944 2013
PubMed-ID: 23929823  |  Reference-DOI: 10.1002/ANIE.201303900

(-) Compounds

Molecule 1 - THIOESTER COILED COIL PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN GCN4 FAMILY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MCR3Mod. Amino AcidSULFANYLACETIC ACID
4TYZ5Ligand/IonPARA ACETAMIDO BENZOIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:1 , VAL A:2 , ALA A:3 , ARG A:4 , VAL A:30 , GLU A:32 , HOH A:211 , ARG C:25 , LEU C:29BINDING SITE FOR RESIDUE TYZ A 101
2AC2SOFTWARELYS A:14 , MCR A:18 , LYS A:21 , EDO A:105 , HOH A:218 , HOH A:222 , ALA C:3 , TYZ C:101BINDING SITE FOR RESIDUE TYZ A 102
3AC3SOFTWARELEU A:29 , TYZ B:101 , HOH B:233BINDING SITE FOR RESIDUE ACT A 103
4AC4SOFTWAREGLU A:22 , ARG A:25 , HOH A:223 , ARG B:25BINDING SITE FOR RESIDUE EDO A 104
5AC5SOFTWARETYZ A:102 , ARG B:1 , LEU B:29 , GLU B:32 , HOH B:227 , ALA C:3 , ACT C:102BINDING SITE FOR RESIDUE EDO A 105
6AC6SOFTWAREACT A:103 , HOH A:202 , ARG B:1 , VAL B:2 , ALA B:3 , ARG B:4 , LYS B:21 , TYZ B:102 , HOH B:217 , HOH B:232BINDING SITE FOR RESIDUE TYZ B 101
7AC7SOFTWAREVAL A:2 , VAL A:30 , ARG B:1 , LYS B:21 , VAL B:30 , TYZ B:101 , HOH B:218 , VAL C:2 , LEU C:29 , VAL C:30 , ACT C:102 , HOH C:229BINDING SITE FOR RESIDUE TYZ B 102
8AC8SOFTWAREMCR A:18 , GLU A:22 , TYZ A:102 , ARG B:25 , LEU B:29 , ARG C:1 , VAL C:2 , ALA C:3 , ARG C:4 , VAL C:30 , GLU C:32 , ACT C:102BINDING SITE FOR RESIDUE TYZ C 101
9AC9SOFTWAREEDO A:105 , LEU B:29 , TYZ B:102 , ARG C:1 , VAL C:2 , ALA C:3 , TYZ C:101BINDING SITE FOR RESIDUE ACT C 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3W92)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3W92)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3W92)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3W92)

(-) Exons   (0, 0)

(no "Exon" information available for 3W92)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w92 A  1 RVARLEKKVSALEKKVAxLEKEVARLKKLVGE 32
                                    10       |20        30  
                                            18-MCR          


Chain B from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w92 B  1 RVARLEKKVSALEKKVAxLEKEVARLKKLVGE 32
                                    10       |20        30  
                                            18-MCR          


Chain C from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w92 C  1 RVARLEKKVSALEKKVAxLEKEVARLKKLVGE 32
                                    10       |20        30  
                                            18-MCR
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3W92)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3W92)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3W92)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

3w8v 3w93