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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE SYNTHETIC GCN4 COILED COIL PEPTIDE
 
Authors :  A. Shahar, R. Zarivach, G. Ashkenasy
Date :  21 Mar 13  (Deposition) - 12 Feb 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Dadon, M. Samiappan, A. Shahar, R. Zarivach, G. Ashkenasy
A High-Resolution Structure That Provides Insight Into Coiled-Coil Thiodepsipeptide Dynamic Chemistry
Angew. Chem. Int. Ed. Engl. V. 52 9944 2013
PubMed-ID: 23929823  |  Reference-DOI: 10.1002/ANIE.201303900

(-) Compounds

Molecule 1 - GCN4N COILED COIL PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN GCN4 PROTEINS FAMILY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2TYZ5Ligand/IonPARA ACETAMIDO BENZOIC ACID

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:1 , VAL A:2 , ALA A:3 , ARG A:4 , VAL A:30 , GLY A:31 , GLU A:32 , EDO A:102 , GLY B:18 , GLU B:22 , TYZ B:102 , ARG C:25 , LEU C:29 , EDO C:103BINDING SITE FOR RESIDUE TYZ A 101
2AC2SOFTWAREARG A:1 , VAL A:2 , ALA A:3 , VAL A:30 , TYZ A:101 , ARG C:1 , TYZ C:102BINDING SITE FOR RESIDUE EDO A 102
3AC3SOFTWAREARG B:1 , VAL B:2 , ALA B:3 , ARG B:4 , GLU B:32BINDING SITE FOR RESIDUE TYZ B 101
4AC4SOFTWAREALA A:3 , TYZ A:101 , LYS B:14 , GLY B:18 , LYS B:21 , HOH B:215 , GLU C:32BINDING SITE FOR RESIDUE TYZ B 102
5AC5SOFTWAREARG C:1 , VAL C:2 , ARG C:4 , LYS C:21 , TYZ C:102 , HOH C:208 , HOH C:209BINDING SITE FOR RESIDUE TYZ C 101
6AC6SOFTWAREVAL A:2 , LEU A:29 , EDO A:102 , LEU B:29 , HOH B:213 , ARG C:1 , VAL C:2 , LYS C:21 , VAL C:30 , TYZ C:101 , HOH C:211BINDING SITE FOR RESIDUE TYZ C 102
7AC7SOFTWARETYZ A:101 , GLU B:22 , ARG B:25 , ARG C:25 , LYS C:28 , HOH C:222BINDING SITE FOR RESIDUE EDO C 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3W8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3W8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3W8V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w8v A  1 RVARLEKKVSALEKKVAGLEKEVARLKKLVGE 32
                                    10        20        30  


Chain B from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w8v B  1 RVARLEKKVSALEKKVAGLEKEVARLKKLVGE 32
                                    10        20        30  


Chain C from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  3w8v C  1 RVARLEKKVSALEKKVAGLEKEVARLKKLVGE 32
                                    10        20        30
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3W8V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3W8V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3W8V)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

3w92 3w93