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(-) Description

Title :  CRYSTAL STRUCTURES OF AN A-T-HOOK/DNA COMPLEX
 
Authors :  E. Fonfria-Subiros, F. J. Acosta-Reyes, N. Saperas, J. Pous, J. A. Subi J. L. Campos
Date :  05 Dec 11  (Deposition) - 23 May 12  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.27
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,K,L,M,N
Biol. Unit 1:  A,B,N  (1x)
Biol. Unit 2:  C,D,M  (1x)
Biol. Unit 3:  E,F,K  (1x)
Biol. Unit 4:  G,H,L  (1x)
Keywords :  A-T Hook-Dna Complex, Oligonucletide Duplex Hmga-1A Protein, Dna- Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Fonfria-Subiros, F. Acosta-Reyes, N. Saperas, J. Pous, J. A. Subirana, J. L. Campos
Crystal Structure Of A Complex Of Dna With One At-Hook Of Hmga1.
Plos One V. 7 37120 2012
PubMed-ID: 22615915  |  Reference-DOI: 10.1371/JOURNAL.PONE.0037120

(-) Compounds

Molecule 1 - DODECAMER DNA
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Other Details: PHOSPHORAMIDITE METHOD
    Synthetic: YES
 
Molecule 2 - A-T HOOK PEPTIDE
    Chains: K, L, M, N
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHKLMN
Biological Unit 1 (1x): AB         N
Biological Unit 2 (1x):   CD      M 
Biological Unit 3 (1x):     EF  K   
Biological Unit 4 (1x):       GH L  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1NH24Mod. Amino AcidAMINO GROUP
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 3UXW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UXW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UXW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UXW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UXW)

(-) Exons   (0, 0)

(no "Exon" information available for 3UXW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:12
                                           
                  3uxw A  1 CGAATTAATTCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  3uxw B  1 CGAATTAATTCG 12
                                    10  


Chain C from PDB  Type:DNA  Length:12
                                           
                  3uxw C  1 CGAATTAATTCG 12
                                    10  


Chain D from PDB  Type:DNA  Length:12
                                           
                  3uxw D  1 CGAATTAATTCG 12
                                    10  


Chain E from PDB  Type:DNA  Length:12
                                           
                  3uxw E  1 CGAATTAATTCG 12
                                    10  


Chain F from PDB  Type:DNA  Length:12
                                           
                  3uxw F  1 CGAATTAATTCG 12
                                    10  


Chain G from PDB  Type:DNA  Length:12
                                           
                  3uxw G  1 CGAATTAATTCG 12
                                    10  


Chain H from PDB  Type:DNA  Length:12
                                           
                  3uxw H  1 CGAATTAATTCG 12
                                    10  


Chain K from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  3uxw K 33 RKPRGRPKKx 42
                                    42
                                    42-NH2


Chain L from PDB  Type:PROTEIN  Length:9
                                        
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                  3uxw L 34 KPRGRPKKx 42
                                    |
                                   42-NH2


Chain M from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  3uxw M 33 RKPRGRPKKx 42
                                    42
                                    42-NH2


Chain N from PDB  Type:PROTEIN  Length:9
                                        
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                  3uxw N 34 KPRGRPKKx 42
                                    |
                                   42-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UXW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UXW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UXW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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