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(-) Description

Title :  TRP-CAGE CYCLO-TC1 - MONOCLINIC CRYSTAL FORM
 
Authors :  M. Scian, I. Le Trong, R. E. Stenkamp, N. H. Andersen
Date :  26 Oct 11  (Deposition) - 18 Jul 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Mini-Protein, Trp-Cage, Cyclic Peptide, Multimer, Protein-Protein Interaction, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Scian, J. C. Lin, I. Le Trong, G. I. Makhatadze, R. E. Stenkamp, N. H. Andersen
Crystal And Nmr Structures Of A Trp-Cage Mini-Protein Benchmark For Computational Fold Prediction.
Proc. Natl. Acad. Sci. Usa V. 109 12521 2012
PubMed-ID: 22802678  |  Reference-DOI: 10.1073/PNAS.1121421109

(-) Compounds

Molecule 1 - CYCLO-TC1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Other Details: SOLID-PHASE SYNTHESIS AND CYCLIZATION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:13 , ASP E:1 , ALA E:2 , GLY E:21 , HOH E:342BINDING SITE FOR RESIDUE CL B 504
2AC2SOFTWAREPRO A:18 , ASP B:1 , GLY D:-1BINDING SITE FOR RESIDUE CL D 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UC7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UC7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UC7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UC7)

(-) Exons   (0, 0)

(no "Exon" information available for 3UC7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 A -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                            ||                    
                           -1|                    
                             1                    


Chain B from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 B -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                           -1|                    
                             1                    


Chain C from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 C -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                           -1|                    
                             1                    


Chain D from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 D -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                           -1|                    
                             1                    


Chain E from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 E -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                           -1|                    
                             1                    


Chain F from PDB  Type:PROTEIN  Length:22
                                                     
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                  3uc7 F -1 GDAYAQWLADGGPSSGRPPPSG 21
                            ||       9        19  
                           -1|                    
                             1
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UC7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UC7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UC7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3UC7)

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 Related Entries

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(-) Related Entries Specified in the PDB File

2ll5 3uc8